Array 1 239868-243123 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYXF01000005.1 Bacteroides fragilis YCH46 isolate Bacteroides fragilis 82A12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 239868 35 100.0 36 ................................... TCAAAATGTTGGAAAATGGAACAGATCCCAATCTTC 239939 35 100.0 32 ................................... AATTTGATGAAGATGACGACTGGGATGATGAT 240006 35 100.0 34 ................................... AAAGCCATTGCCGAAGATTTAGAGCGCTTGATTT 240075 35 100.0 43 ................................... ATTATGTGAAAAATCCAATGACGGAGTGTTGATGGTAATTGAT 240153 35 100.0 32 ................................... AATATTATGAATTTGCAATCCAGCTGATTAAT 240220 35 100.0 34 ................................... ACGAGGAGGCAAAATGATGATTTGCCGTTCTAGG 240289 35 100.0 35 ................................... ATGCTTTTAGGCGTTGCAAATGTAGTAAGAACAAT 240359 35 100.0 38 ................................... TTCTGATTCCCAAAACGAAATTCATTTAAACATCGCAG 240432 35 100.0 34 ................................... ATTCTCCGCCTGATTTCGCGCTCTGCTTATCGCA 240501 35 100.0 34 ................................... TTTTGTAATTGGTTTTATTGTCGGCATCATTTAT 240570 35 100.0 32 ................................... ATATTTTCTCCTATGAAACGGGAGACAAGAGT 240637 35 100.0 35 ................................... TCGCGATTTGGTCATCGATATGTTTTGGGAAACAT 240707 35 100.0 35 ................................... AATATCAAGGGCCACGGAAATTATTTATTTCCTCA 240777 35 100.0 35 ................................... GGTTAATCAGGAAGTGTTGAGCGAAGTTTAAAATT 240847 35 100.0 37 ................................... CGGAAAAAGAAACAAACATTGGGACCGTTGTGTCTTT 240919 35 100.0 37 ................................... CGGAAAAAGAAACAAACATTGGGACCGTTGTGTCTTT 240991 35 100.0 34 ................................... AGATTTTTTCTGTAATATCATTGGTCTGCTTTTT 241060 35 100.0 35 ................................... TAATATTGGTTAAAGAATTGTTCCCTTGCTCCGAA 241130 35 100.0 35 ................................... TAATATTGGTTAAAGAATTGTTCCCTTGCTCCGAA 241200 35 100.0 34 ................................... CCTGATACGTGAAGAATATCAGCGCACCGGCGGT 241269 35 100.0 34 ................................... GAAAAAAACTTGAGAGCATCGTAAGAGATGCTAA 241338 35 100.0 35 ................................... TTAAGTTTTGCCAGAGTTGGTATTCAGTACAGATT 241408 35 100.0 35 ................................... ATCGAATACGGGAGCTTTGAAACCGATCAGACCAT 241478 35 100.0 35 ................................... TTTATCTGCGGCAGAAAGAAATCGTGACTACGTGT 241548 35 100.0 34 ................................... AAAGCTTTATCGCTAAAAGTTACGATTACATTGA 241617 35 100.0 38 ................................... TTGAAAATGAAGAAGCCGCCATTGATGTCGATAAAACG 241690 35 100.0 34 ................................... ATAACTTCTTTGGCGAGAACACCATCATCAACGT 241759 35 100.0 37 ................................... CGATCTCCCCATTGGCGTTCAGGTCCGGACTCGGTAT 241831 35 100.0 38 ................................... GAACAGGAATTTGAGAGAAGAAAGGCGTTTAAAAAAAT 241904 35 100.0 34 ................................... GGTGTAGCTGCCGGTGCTAAATTGACTTATTTTC 241973 35 100.0 35 ................................... TCAAAAAATTCGGTATTTCTCAGAGGAAGACAGCT 242043 35 100.0 34 ................................... GTGTTATCGGGAATAATGTCAAAATCTATGAAGG 242112 35 100.0 34 ................................... ACAAAGAATTTTCCATTACCCTTTTCGGAGGAGT 242181 35 100.0 36 ................................... TTATGTTTGTGTGGGATTTTGTTTACCCTGCCAAAA 242252 35 100.0 36 ................................... CTTATGTTATTGCATTCAAACCCAATTTAGCTTTTT 242323 35 100.0 36 ................................... AAAGCTGAACAACGGAAAGGAAGAAAAAATTTCAGT 242394 35 100.0 32 ................................... GTCTGGTGGGAATGATTATCGGCGGTTGCTTT 242461 35 100.0 34 ................................... TCTGAAACCGGAAGAGGTCTCGGTTGTGGAGAAA 242530 35 100.0 35 ................................... CTCTCTGGAACTCCCGTATCAAGAAGGATGCCTGT 242600 35 100.0 36 ................................... AGTAAAATCAGTACAGCTAAAAATTGAGCTAAAACT 242671 35 100.0 31 ................................... AAAATTGACTTTTGAAAACATCCCGGACGAT 242737 35 100.0 36 ................................... CTGAAACAAGTTCTCCGCTCATGGCTTATTTCACGA 242808 35 100.0 33 ................................... TCACAAAACCCACGAGGCAGCCGACAAATTTGT 242876 35 100.0 36 ................................... TGTACAGCGGTCCTTTGTGATTAATATACATAATAA 242947 35 100.0 38 ................................... GGAGTTTCCTATTTTGCAATCTACTGGGTTGCAACAGT 243020 35 100.0 34 ................................... TTAGCAAGAATGAACCAAATCCTTGCCAATCATC 243089 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 47 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : CTAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGCACTTTGCTTTTGGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 101247-100125 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYXF01000003.1 Bacteroides fragilis YCH46 isolate Bacteroides fragilis 82A12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 101246 29 100.0 35 ............................. TCAGTTTGCTGATTTCCGTAGGTCAATATCTCCGA 101182 29 100.0 36 ............................. ATCTTATGCTCTTAACAGGAGTCGTACTTTCTCTAA 101117 29 100.0 34 ............................. ACGCTATACTGATTAAGTCCTGTGACTTTTATTT 101054 29 100.0 35 ............................. AATACTAAATATTTATTTCTTCGTATTTCTTCTTC 100990 29 100.0 35 ............................. GTCCTTCCTTCTGATGTTCAAGCAAACTATGAAAA 100926 29 100.0 34 ............................. GAAAATATACGAAAGGCACTTTGTTCTGCATGGT 100863 29 100.0 35 ............................. ATACGAATTAGACTTCAGCTTGAATTCCCTCTCCC 100799 29 100.0 34 ............................. GAATAAATAAATAGCATATCTAGTTATGGGAATA 100736 29 100.0 35 ............................. ATATGTTTATTTCTTATTTCTCTAAGTTGTGAACT 100672 29 100.0 35 ............................. CCTGGCGGGAGAGAGTTTCCCGGGATCTACTCCGG 100608 29 100.0 35 ............................. TTTCCAGGCTGCCACAAGAGATGCAACCGAATGTA 100544 29 100.0 35 ............................. AATTGACGAAGAGATTGGAAGAAGTGGCGAATATG A [100539] 100479 29 100.0 34 ............................. TCGACAAAGACACCTTCATGATAAGCACCAATCA 100416 29 100.0 37 ............................. CTGGAAATTCTGCATCAACGTCATCGGCCCTTTGAAT 100350 29 100.0 35 ............................. TACTGTCCCCAATACTCGACATCGATATCCACCTG 100286 29 100.0 37 ............................. ATGATATCAACTATATTGAGAGCTGACTTTACCCGGT 100220 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 100154 29 93.1 0 .........................G.C. | A [100130] ========== ====== ====== ====== ============================= ===================================== ================== 18 29 99.6 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //