Array 1 3803246-3804738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029567.1 Salmonella enterica strain DA34821 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3803246 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3803307 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3803368 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3803429 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3803490 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3803551 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3803612 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3803673 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3803734 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3803795 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3803856 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3803917 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3803978 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3804039 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3804100 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3804161 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3804223 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3804284 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3804345 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3804406 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3804467 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3804528 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3804589 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3804650 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3804711 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3820870-3822834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029567.1 Salmonella enterica strain DA34821 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3820870 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3820931 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3820992 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3821053 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3821114 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3821175 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3821236 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3821298 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3821359 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3821420 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3821481 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3821542 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3821603 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3821664 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3821725 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3821786 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3821847 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3821908 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3821969 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3822030 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3822091 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3822153 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 3822214 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [3822256] 3822256 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3822317 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3822378 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3822439 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3822500 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3822561 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3822622 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3822683 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3822744 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3822805 29 96.6 0 A............................ | A [3822831] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //