Array 1 581-2135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHREM010000009.1 Klebsiella quasivariicola strain Q2548 NODE_9_length_225536_cov_34.362554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 581 29 100.0 32 ............................. CATCCAGACGACACTGTTCTGCCAGAGCCAGA 642 29 100.0 32 ............................. GAGAAAGTTAAGCAACGAGCCAAGGCAAATGG 703 29 100.0 32 ............................. CCGATCGCACTGTTCCCTTTGTGCTTGTTCGT 764 29 100.0 32 ............................. CGCATCGCCGAGCGGGAGTCTCGCACCGTGAA 825 29 100.0 32 ............................. CTGGTAATCAAATCTTCGATATCGCCTTCAAT 886 29 100.0 32 ............................. GCCCACCAGAGGTGACGCGGGTCGTCAGTCCC 947 29 100.0 32 ............................. CATGAGGGGATAAAGCTGCAGCTGGCTGACCG 1008 29 100.0 32 ............................. CCGATGTAGTTAAGATGCATACCCGCCCCCGT 1069 29 100.0 32 ............................. CTTACTTGCCTCATCTGCATATACGGCGTTAG 1130 29 100.0 32 ............................. AGTTAACCAGCATATAACCCAGCCATTCCTGT 1191 29 100.0 32 ............................. CCGAGCCTGAGTTTTGCGAACGGCCCAGCCAG 1252 29 100.0 33 ............................. CTTTAACTGTAACTGATACTATTCGTGGTGAGC 1314 29 100.0 32 ............................. CGTGGGAGTAGTAATCAGCGATCTTATTGAAG 1375 29 100.0 32 ............................. ACGCTGATTATTACGCGCGTCGGCTATACCAA 1436 29 100.0 32 ............................. ACGTCGTTAGTGGCATTCGCGGCAAACTCAGC 1497 29 100.0 33 ............................. CTGTCCCATCCATACACCCAGGGTAAAAGCTGC 1559 29 100.0 32 ............................. AATGATTCCATAAATATTATTGGGTTGCAGGG 1620 29 100.0 32 ............................. CGAATTTGTAGCCCACTCTATACGCTGGCTAA 1681 29 100.0 32 ............................. TCTGGTAGTAGTCGTAGTGCTCGTTAGCGTTT 1742 29 100.0 32 ............................. TAATCGCACTCGGCCTGTTTGTTGGCCTGAAA 1803 29 100.0 32 ............................. CAACCTCCGTTTTGTTCATGAGGCGCAACCAG 1864 29 100.0 32 ............................. TCGCATACCATGGTTGGCTAATGGACGGCACT 1925 29 100.0 32 ............................. GAAGCTAACGAAGAAATGAAAGCTGCGGCTGG 1986 29 100.0 32 ............................. TCACTAGCGTGGCGATTCAGTAACCGTTCCGC 2047 28 96.6 32 ................-............ GAGCGCGTGCGCTACTACCGGGAGCAGAGCGC 2107 29 93.1 0 .........................G..C | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTTGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTTGCCTTAAAAAGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : CGCCATTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAGCGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACGGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127804-128439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHREM010000001.1 Klebsiella quasivariicola strain Q2548 NODE_1_length_438364_cov_30.275614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127804 28 100.0 33 ............................ CCGTTGGTTTGCAGAAAGCGGCAGGCTATCTGG 127865 28 100.0 33 ............................ CGTGACGGTAAAAAACGTCCTCGGTATCTCTAA 127926 28 100.0 33 ............................ TCAGCGTTGCCCGTTCAGTTGCCGCTAACGGTT 127987 28 100.0 33 ............................ CGGCTTGAAGTTCATCGGCAGAACAGTCAGCAG 128048 28 100.0 33 ............................ CCCGGAGAATGGTTAACCATTCTCCCCGGCTCA 128109 28 100.0 33 ............................ CTGGAAATAACGTCATTTAAATCCACGTTTTCA 128170 28 100.0 33 ............................ CGTTGCGCGGCAGCATGCGCTCCATGTGGTGCA 128231 28 100.0 33 ............................ CGGCGCTCTTCTGCTCCTGGTGCGCCAGCCGGT 128292 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 128353 27 92.9 33 .................-.A........ TCTCGTGATGGTCTATGACGTCGCCGTCGGTGA 128413 27 85.7 0 ..............T..-....C.A... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTGCGAGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAAGATGTGTGGATTTTTCCGCAGAAGTAACTACGCGAAGCCACGGAAGGCAACCGCCAGGATGACGCGCTACGTTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCAAGTAGGGTATATCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACTCAATATGCTGGT # Right flank : CAACAAAACTGGTCAACTGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCAACTGAAGTATGATTATTCATACTAATTATTTATAATGTCTGATATTGTCGAGTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCCTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAGTCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGTGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGCGATTGCCCGGGCGCTTATAGCGCTGTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137102-138715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHREM010000001.1 Klebsiella quasivariicola strain Q2548 NODE_1_length_438364_cov_30.275614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 137102 28 100.0 33 ............................ CATGGTCACGAAGGAGGGGGCCGAGGGAGCAGT 137163 28 100.0 33 ............................ TGAAAGCGGAGATCATCCCGGAGTTTTTGCCGT 137224 28 100.0 33 ............................ CGGATAAGCTGATCCAGTTTTGCCGTTTCCTCT 137285 28 100.0 33 ............................ CCGAACGGGCAACGCTGATTTCATGCAGGCGGA 137346 28 100.0 34 ............................ CAGGCCGCCGCCAACAATCACGTCATAGCCGTGG 137408 28 100.0 33 ............................ TAACGATGTCCGTCTTTGATTTCGCGTCCTTCT 137469 28 100.0 33 ............................ TCCGGTACTACCGGCGCTGGCTGCGCGTGGCGA 137530 28 100.0 33 ............................ TAGCAAGATCCACCGAGCCTGAAGTGGTGAAAA 137591 28 100.0 33 ............................ CACAACCATAGACCGGCTCATCCAGTTTCGTGC 137652 28 100.0 33 ............................ CGTGGAATACGGTTTATTCAGTTCCGGCGTCAG 137713 28 100.0 33 ............................ TCGCCCGAAAGAACAGCGCGACGCCTGGCTGCT 137774 28 100.0 33 ............................ TCAGCCGGAAACCAGTTCGCGGTTTCCTCCAAA 137835 28 100.0 33 ............................ TTTTTCACTGTGATTGTGGTTTTTCCTGGGCGA 137896 28 100.0 33 ............................ CAAGTGGGCATTTACGATGATTGGTTTGGAGAT 137957 28 100.0 33 ............................ TGCATGGCTGATGTACAGCTACGGTTTGTTGAT 138018 28 100.0 33 ............................ CGAAATTTTCCCCGCGCCGGCATACGCCTGCGG 138079 28 100.0 33 ............................ CGCTGTTTTCACCGTCAGGTGCCTCACGGGTCA 138140 28 100.0 33 ............................ TTGAGAACGGCATGAAACGTGCGGTGATGCTGT 138201 28 100.0 33 ............................ CCATCACCCGTTGAGTTGCCGGGGCCGCGGTTT 138262 28 100.0 33 ............................ TTCCCCGTGGGCGGGCGGAGTCATCAAGCATTC 138323 28 100.0 33 ............................ TAATCGGAGTGGCAACCTGGTAATACGGTTTGC 138384 28 100.0 33 ............................ TGCGGCTGGCCCAGCGCGGCATGTGGATGGATG 138445 28 100.0 33 ............................ TCATGCGTCTTCCCGGGAAAAAGCAGTACCGGA G [138467] 138507 28 89.3 33 ..............A.......G.G... TACTCGCCATGGACATTGGCGAGGTGATCGCCT 138568 28 100.0 33 ............................ CAGGAGTGTGTTTGGCCCGACATTGCAGATCGA 138629 27 89.3 33 ............T..A.-.......... GGTCAAAACCGCGGTCCCGGCAACTCAACGGGG 138689 27 85.7 0 C...........G........A.-.... | ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTCCGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAATAACTGGCGTGGTAGTTTGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCGACCTGCTCGCGGCTGTCGGCACGAAAGGCAATGTGCAGCGGCGCCGGTTTTTCTGCGCTTTGATAGAGGCATAGAGAAACATCGCCGCTGCCGGCCAGCTCTGCGCCGTAGCTCGGTTCGCCTTCGCCGACCAGCGTTACGCCGAGCGGGGCGAGGGCCTGTAAAAAGAACGCTTTGCTTGCGGCGTAGTCGCTGACGCCAAATTTCACATGATCGAACATAACGTCTCTTCTCCTGTGGACGGAATATCGCCAGCTGAACGGTTCAGCCAGGAAATAGATGCAAAATAGTTAACAACGGTTATTAACTTTTTTAACAGCTCAAAATGTTTAATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //