Array 1 1101750-1102755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041411.1 Escherichia coli strain STEC719 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1101750 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1101811 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1101872 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1101933 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1101994 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 1102055 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 1102116 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 1102177 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 1102238 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 1102299 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 1102360 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 1102422 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 1102483 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 1102544 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 1102605 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 1102666 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1102727 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1129719-1132431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041411.1 Escherichia coli strain STEC719 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1129719 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 1129780 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 1129841 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 1129902 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 1129963 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 1130024 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 1130085 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 1130146 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 1130207 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 1130268 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 1130329 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 1130390 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 1130451 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 1130512 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 1130573 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 1130634 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 1130695 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 1130756 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 1130817 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 1130878 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 1130939 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 1131000 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 1131061 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 1131122 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 1131183 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 1131244 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 1131305 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 1131366 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 1131427 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 1131488 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 1131549 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 1131610 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 1131671 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1131732 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1131793 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1131854 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1131915 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1131976 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 1132037 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 1132098 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1132159 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1132220 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1132281 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1132342 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1132403 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //