Array 1 4645696-4647737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZT010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA17 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4645696 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 4645757 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 4645818 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 4645879 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 4645940 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 4646001 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 4646062 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 4646123 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 4646184 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 4646245 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 4646306 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 4646367 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 4646428 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4646489 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4646550 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4646611 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4646672 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4646733 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4646794 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4646855 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 4646916 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 4646977 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 4647038 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 4647099 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 4647160 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 4647222 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 4647283 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 4647344 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4647405 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4647466 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4647527 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4647588 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4647649 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4647710 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4663870-4664674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZT010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA17 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4663870 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 4663931 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 4663992 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4664053 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4664114 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4664176 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4664279 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4664340 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4664401 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4664462 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4664523 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4664584 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4664645 29 96.6 0 A............................ | A [4664671] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //