Array 1 185967-185205 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAKOEV020000011.1 Salmonella bongori serovar 48:z81:- strain 2014K-0331 2014K-0331-D00290-STE4673_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185966 29 96.6 32 .............C............... TAAAACCAGGAATTTTCACCTTGTTCCTCTGT 185905 29 96.6 32 .............C............... CAGGCCTGCCTCGATATCACTGGAGCGATCTA 185844 29 93.1 33 .....T.......C............... GTCATACAGCTTATTCGATCGCGTCACGCCTGC 185782 29 100.0 32 ............................. TTAGCGACCCGGATGTGCTGGCGCTGCTGGAT 185721 29 100.0 32 ............................. TTAGCGACCCGGATGTGCTGGCGCTGCTGGAT 185660 29 100.0 32 ............................. TCCACAGGCGCGGTGCTACCGCCCATCAGTAC 185599 29 100.0 32 ............................. CGCTTGTGAGCTTGTTCTTTGGTAAACCCTGC 185538 29 96.6 32 ............................A CCGCATCAACCGCCACACCTGGCAAAAACGAC 185477 29 93.1 32 .............C..............A CACCCTTTCCGTTTAGATACGCCTCGGAAATC 185416 29 96.6 32 .............C............... GGGTTTTAGGTCGGGATGAGCCATAAATCGCT 185355 29 93.1 32 ............TC............... CGGAACTGGTTAACGAGGGCGAACACGCGCAA 185294 29 93.1 32 .............C.....A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 185233 29 72.4 0 ............TC.......C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 94.7 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TGCCAGCCATTATTTTCCGCGGATGGCGGAAAAAATGCCGATCGAGATGTACTGGCAACAGGCGCTCATTAAAGCGCGGAAGGCCATTACGCTTTTTCCCACTGCGGCGAATGTATCTGCCTTTACGGGTATAGAAACGCTTTTTCCTTTTATTCAGCATCCCACGCCGCTACAACAAAAAGCGCTAACGCTGGATATTCACGTGGATGGTGCCCAGCTCTTTATTCTGGAAGATGTCACCGGGGCCGGAAAAACAGAGGCGGCGCTTATCCTGGCCCATCGGCTGATGGCGGCAGGTAAAGCGCAAGGGCTCTATTTTGGGCTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGCATGGCAAATAGCTGGCTGGCGCTGTATCAGCCGGATTCTCGTCCCAGCCTGGTGCTGGCACATAGCGCACGTCATTTAATGGATCGTTTTAACCAGTCTATATGGTCGGCCAGTCTTTTCGGTACGGAAGAGCCTGATG # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCGGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195202-194563 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAKOEV020000011.1 Salmonella bongori serovar 48:z81:- strain 2014K-0331 2014K-0331-D00290-STE4673_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195201 29 100.0 32 ............................. CGCGTTTCATAGGCTCACAAAATACGCGCAAA 195140 29 100.0 32 ............................. CCACAGCAGATAGCTCAGCCATTGCAGCCAGT 195079 29 100.0 32 ............................. GGCGGCATCGCTGTAATAGGGTCGCTGATCGC 195018 29 100.0 32 ............................. CTAACGGTTCATATGAATGCAGGCGTTTATCA 194957 29 100.0 32 ............................. ACAAATTTATTTATCGATTCCATGAATTTAGC 194896 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTAGGTTACAC 194835 29 100.0 32 ............................. TTCATTCACAGGGTTAGTGATTGTTATTCACT 194774 29 100.0 32 ............................. TGCCGATGAGCGCTCCATTAGTTAGAAACTAT 194713 29 100.0 32 ............................. TTCGCTCGCTTGCAAATATTTATCAGTCCCAA 194652 29 100.0 32 ............................. ACTACGAATACTCAGACGTCGTAGACTCCTAT 194591 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATCTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTAAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //