Array 1 8630-9330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBI01000012.1 Escherichia coli strain MOD1-EC6183 MOD1-EC6183_12_length_91854_cov_20.2187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8630 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8691 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8752 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 8813 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 8874 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 8935 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 8996 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9057 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 9118 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9180 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9241 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9302 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83729-85343 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBI01000018.1 Escherichia coli strain MOD1-EC6183 MOD1-EC6183_18_length_85378_cov_20.6379, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83729 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 83790 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 83851 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 83912 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 83973 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 84034 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 84095 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 84156 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 84217 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 84278 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 84339 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 84400 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 84461 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 84522 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 84583 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 84644 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 84705 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 84766 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 84827 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 84888 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 84949 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 85010 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 85071 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 85132 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 85193 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 85254 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 85315 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //