Array 1 135509-137462 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEU01000015.1 Streptococcus ruminantium strain MO449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 135509 36 100.0 30 .................................... CTATATTTTGATGACGACAATGTCAAACTT 135575 36 100.0 30 .................................... GAAAATCCCTCTTTCAAGTCCGCTTGAATA 135641 36 100.0 28 .................................... CTCTGTGATAACCTTGAAAACCATCTCT 135705 36 100.0 29 .................................... ACTGAATTAAAGAAAGAACTCAATGCTTG 135770 36 100.0 29 .................................... CAGCAACAAGCCTTTCACTAATAGTTCCC 135835 36 100.0 30 .................................... TTTTGCCCTTTTACCGAGATGATTGCAGGG 135901 36 100.0 30 .................................... ATAAACTGAAAACCATAGCTGATGAGGCTA 135967 36 100.0 30 .................................... AACATAAAAAGCCAGCACTATTCGTACTGG 136033 36 100.0 30 .................................... CTTCAATTGTTTTAAGTTTACCTGCTTGTG 136099 36 100.0 30 .................................... CCTCAAGTGTTGCGTTGTTCAATGACAGTT 136165 36 100.0 30 .................................... ATTATACGCATACAAAACTGAATAAAATAA 136231 36 100.0 30 .................................... TATGGCGAAAAAACCAAGCGGACCGAAAGT 136297 36 100.0 30 .................................... AATCCTTGCCCACGATAGTGATTTGGGCTG 136363 36 100.0 30 .................................... TTTTTAGCGGCGCTTGGCAGTATCCGCATT 136429 36 100.0 30 .................................... GATCTGTTTCATGGAAATCTTCGATGATTT 136495 36 100.0 30 .................................... ATTTTTTCATTGTCTGTTAAATCTTTGTGT 136561 36 100.0 30 .................................... GGAGAAGATGGCTTCCTTCTACAGGTATTT 136627 36 97.2 30 .............T...................... CTAGGTGCTGTAATTGGTAAAAGTGAACTA 136693 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 136766 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GG [136772] 136834 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 136900 36 100.0 30 .................................... GGGTGGTTGGTTTAACAACAGTCCAGACGT 136966 36 100.0 30 .................................... ATAGTCATTACCAAAACACTCAATCACATA 137032 36 100.0 30 .................................... ATGATGGTAATAATATTACATCACTACCAT 137098 36 100.0 30 .................................... AACGAGGTAATAAAATGATGGTAATGTTAA 137164 36 100.0 30 .................................... AGTTCTTCAACATCAACCTCTTTACCCTCA 137230 36 100.0 30 .................................... TATCCGCTGAGTGCCTTCACCGTCCAGAAC 137296 36 100.0 29 .................................... CTGGGTTAGTAGTGACAAGATTATGATAG 137361 36 100.0 30 .................................... AATGCAGGCAAGAAGGTCAAAGGCGCAGTA 137427 36 88.9 0 ...............................CCCC. | ========== ====== ====== ====== ==================================== ===================================== ================== 30 36 98.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGATAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : CCCTCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGCAATGTAAGATAATTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //