Array 1 159070-157111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQS010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain MRS-17/00712 sMRS_17nonadapt_R2_Salmo_subset_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159069 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 159008 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 158947 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 158886 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 158824 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 158763 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 158702 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 158641 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 158580 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 158519 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 158458 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 158397 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 158336 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 158275 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 158214 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 158153 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 158092 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 158031 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 157970 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 157909 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 157851 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 157790 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 157729 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 157668 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 157607 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 157546 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 157485 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 157424 29 100.0 11 ............................. CGGCCAGCCAT Deletion [157385] 157384 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 157323 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 157262 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 157201 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 157140 29 93.1 0 A...........T................ | A [157113] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176967-175352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQS010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain MRS-17/00712 sMRS_17nonadapt_R2_Salmo_subset_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176966 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 176904 29 100.0 31 ............................. ATCAAATATCAGATAACCCCGTCGGCAAACC 176844 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 176783 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 176722 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 176661 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 176600 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 176539 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 176478 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 176417 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 176356 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 176295 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 176234 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 176173 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 176112 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 176051 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 175990 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 175929 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 175867 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 175806 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 175745 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 175684 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 175623 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 175562 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 175501 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 175440 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 175379 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //