Array 1 3044-3194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATVW010000022.1 Planosporangium flavigriseum strain TBRC 198 22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3044 29 93.1 32 .......................T....C TCGACCGCCGCGCGGCACGTGGCCGGCTGCTG 3105 29 100.0 32 ............................. CGCGGGAAGTCGGGCGGCTCGGACGGGGTGTC 3166 29 89.7 0 ...A....................C...C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCG # Left flank : GCCCGAACTCGCCCCTGCTCCTCACCCCGGAGCAGGCTGCTCTTCTCGCACTCTTCGGGTGACCCGGCATCCGTATCTGTGCCTTCATCGCGACACGGTGCGGCTCTAAGGCACCCCGCACGCAGCCCTCAATCCGCCTCTTCAGCTGCCAGCGAGTTGAGAGACGCACGCAAGTAGGAGCCGCTGGAGACCCGGGCACCGGTTCATGACCCTGGCCATGCTCGCCCTTACGATCCTGGCCATTTTCACCGGTGCAGTCGCCCCGGCACCTGACCCCGACCCGCACCGCTACGCTCGCCAGCGCAACCTAATCACCCTCACCACCTCCAAGACCCCCGCCGACTCAACGTCCTAATCACCCAAACCTGTTCACGGCTTGGCCTCGTAACGAACAAGGCTGGGCGGTTCGCACTGCGGGTCGCGATCGCTGGTATCCCGTAGACCTCAACGGACTGATATTGGCAGCCCGACCCCGTCGGTAACATTGCAGGTCAGCAAGC # Right flank : CCGTGAGACGGCCGTTCAGACGGCCAAGGCGGCCAGTGCCCCGCAGGCGGCCTCTTGGTGCTCGCGGGCCATCGCGGCGGAGGTGTTGGCGAGCATCACGTCGGCCAGGGTGTGCCAGTCGGCGCCGACGAACTGGAGGAAGTTAACGACGAGGGGTCGTCTCCTGCTCTGGGGCACGCCCAATGACGCCCGTACCGAGGTCTGGAAACCAGACTCTACGATCCATGGGTGGACGATTCGGCCGCGTCTTCGCAGCCAAACTGGTTTGCTAATTCCTTGATGATTTCAGGGGTGGGTGATGGAGCGCATCTGGCATTTTGTATCAGGTGAACGTGTCGGCTCGCTGAAATCTACGGAAGGTCGTCAAGGTGTGCGGGTTGGGGCATTGTCGGCCTCTCTACTGCTTAGCGTGCGAACACAACTGCGTAGCTGCGCTTTCTGCGTCGCTCAATTTCGTGTTGTTATGCTCCTTTGGTTTCGCGATTAATACTCTAGGAGTC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 197876-191315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATVW010000001.1 Planosporangium flavigriseum strain TBRC 198 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 197875 29 100.0 32 ............................. TCAGCTCGACCGACTGCGCGATGATCGATCAC 197814 29 100.0 32 ............................. ATGCTTCGACGTACGCGTGCCGTTGCCACGCG 197753 29 100.0 32 ............................. GCCCTGCTCGACGGGCAGGCCATCGAGTGGCT 197692 29 100.0 32 ............................. AACGCCAGCCCGCCGGCGGATCCAAACTGGTC 197631 29 96.6 32 ............................A TCGGGCTGCGTCACGGGACCTCCGGCGTATCG 197570 29 100.0 32 ............................. AGGCCGCCGAGCAGTTGGCCACCCAGATCATG 197509 29 100.0 32 ............................. TCGGGCTTGAGGGCGTCCTGGAAGACCCGCTC 197448 29 100.0 32 ............................. CACTGCCGCCGTGGCGGGCAGCTTGCGGTTCT 197387 29 96.6 32 ............................G CTGGCCGCCGGTATCACCTCGACGGCCACCAC 197326 29 96.6 33 ............................G TGCATGAGGTCGCCCACCGCGCGGAGCAGCTCG 197264 29 100.0 32 ............................. GCCGGGGCCTCGCTGGCGTTTACGGGTCGCTC 197203 29 96.6 32 ............................G AACTACTGCAAGCTGGCCGGCGCGAACGACGC 197142 29 100.0 32 ............................. ATGTCCAGCAGCTCGATCGTCTGGTGGGGTTG 197081 29 100.0 32 ............................. GGTGCCGGGCTGGTGCGGTCGTCGATGCCGGG 197020 29 96.6 31 ............................T CACACCCAGCCGTCCGGCGGCACGATGGTGT 196960 29 100.0 32 ............................. TGCGCCATCCAGCTCACCAAGGCGCAGATGGG 196899 29 100.0 32 ............................. CAAGGAGTCAGATCGTGACCTACCCGCAGCAG 196838 29 100.0 32 ............................. GAGTCCGTGCGCGCCCTGGCCGGTGCCGCATG 196777 29 96.6 32 ............................G GTTGTGGCCCTGACCTGCGACGTTCAGAAGTT 196716 29 100.0 32 ............................. GAGACGCTCATCTTCTTGCCCTTCTTGGTGAT 196655 29 96.6 32 ............................G CTGGCGCAGCTCGCCTACGCGTACGGGTGGGA 196594 29 100.0 32 ............................. CGGGCGCTGACGTGGTGCAGCGGTGGGAGGAC 196533 29 100.0 32 ............................. CCCACACCGCGACTGCGTACTCGTCGGCCTGC 196472 29 96.6 32 ............................G GGGATGCAGTCGCGTCCCAAGCCAGCGGTACC 196411 29 100.0 32 ............................. TCGTCGCTGCGATCTTGTGGCCCCTGGCGTAC 196350 29 96.6 32 ............................G AAGGCTCACGTACGCCACCGGTGCGGGCTTCC 196289 29 100.0 32 ............................. GGGCAGCGAACCTGCATCGAGGGATGCGTCGG 196228 29 100.0 32 ............................. ACGGACCGGTGGATCAGGATCGCCGCGGATCC 196167 29 96.6 32 ............................G TTGTGGGTGTCCATCGGGGGGACATCGGAGGC 196106 29 96.6 32 ............................G GGCCGGCTGACTGCCCGTCTGCGCCGGGGCAG 196045 29 96.6 32 ............................G GAACTGCGCGATCGGCACGCCGAGGACCCCGG 195984 29 100.0 32 ............................. TGCAGTACCTGGTCGGTACCGTCCGGAGTGAA 195923 29 100.0 32 ............................. GAGTACTCGACGTCGCGGACCATCTGCTTGAG 195862 29 100.0 32 ............................. CTGAACCCGGTAGTGAGCGGCACGGCCACGGT 195801 29 100.0 32 ............................. GGCCTGCCGCAGCCGGTCACCCGTGACCAGGA 195740 29 96.6 32 ............................T ACGACCTTGCGCGCGATGGTCCGACGCGTCCA 195679 29 96.6 32 ............................G GTGCGCGGGCTCGCTCTCGGCGTCGGCAACAT 195618 29 100.0 32 ............................. GATTTCGCCGCCACGCTCCCGGCCACCTCGCC 195557 29 96.6 32 ..............G.............. GACACGGTGATCGAGTACCGCTTCCCGGCGCA 195496 29 96.6 32 ............................G TGGTGGACCGCCTACCAGGCCGGATACTCGCC 195435 29 100.0 32 ............................. GACCCCGGCGCTGTGTCTGACGGCTCGATCTG 195374 29 96.6 32 ............................G ACGAACGCCGCGCTCTCGTCGGCGAGGCCGCA 195313 29 96.6 32 ............................T CTTTGACGGACTTTCCGAGCAGCGCGAGGCTC 195252 29 100.0 32 ............................. ACGGTACGGGGAGACCGGCCTGGCGCCGTACC 195191 29 96.6 33 ............................G TATGCTCCAATGCCGGGAACATCCGCAGGGTGC 195129 29 96.6 32 ............................G TCCCTGCAATGGTCGGTGGTCGGCAACAGCAG 195068 29 100.0 33 ............................. GGAAATCGGCCGCGGCCGCCAGAACGGCGGCGA 195006 29 100.0 32 ............................. GCGATCGCCTACGCCCGCCAGCAGCTGGGCTC 194945 29 100.0 32 ............................. GCGTTGGCGTCACAACCGGACTGCGAGCCGAT 194884 29 96.6 32 ............................G GAGATCACTGTGGCTGAGATCGTGCTCGCCGA 194823 29 100.0 32 ............................. GACGGGTACCGCGTGGTACGTACCCGGCCGGT 194762 29 100.0 32 ............................. GTCGGCCTCGAAGGCGACTACCTCGAAAACCC 194701 29 100.0 32 ............................. GGCCGGACGCGCGGCCGGGCTGGAGCCGCTAC 194640 29 100.0 32 ............................. CCGGGCGCCGCGAGGGAAGCCGCCATGATGCT 194579 29 100.0 32 ............................. AGGTAGTAGGCCTTGCGGATGGCGTGGGGTCC 194518 29 100.0 32 ............................. AGGTAGTAGGCCTTGCGGATGGCGTGGGGTCC 194457 29 100.0 32 ............................. ATCGAAGACGCCTTCGCCGAGGCGCAGCTCCC 194396 29 96.6 32 ............................A CACTGGCACGCCGCCGGTGCTGGCATGCCCGG 194335 29 96.6 32 ............................G TCCGGCAATGACGTCTCACGACGGCCCTTCGC 194274 29 96.6 32 ............................G GCACGGCGCCGACGGAGGAAAACCAGTACGGC 194213 29 96.6 32 ...........A................. GGGGGCAGCCAACAGGACTAAGGCGCGGCAGC 194152 29 96.6 32 ...............C............. GACTCGACCAGTACGCCGCCGATACGGAACGA 194091 29 96.6 32 .......................A..... GCCTCGAACAACGCGATCCGCGCGCCGAGACC 194030 29 100.0 33 ............................. AGCCGGTTGGTCACCGCCGGCGACAGCATCGGG 193968 29 100.0 33 ............................. AGCCGGTTGGTCACCGCCGGCGACAGCATCGGG 193906 29 100.0 32 ............................. CACCCCGGTGTCGTGCCGTTCTCCGACGACCC 193845 29 100.0 32 ............................. CACCCCGGTGTCGTGCCGTTCTCCGACGACCC 193784 29 100.0 32 ............................. GTCGCGCCCGGGCCGGCAAACACCACGGCATC 193723 29 93.1 32 A...........................T GCCGGGGCGGCATCCCGCCGGTGTCGTCGGCG 193662 29 100.0 32 ............................. GTCACCCCGATCGGTTCGCGTCGCGCCCAGAC 193601 29 96.6 32 ............................G TGCAGGGTCGCGCCCTTCGGATGCTGGAACCG 193540 29 100.0 32 ............................. GTGGTGCGCACCGAGACGCTCGACGCCTACCG 193479 29 96.6 32 ............................T TGACCGTGGCGTCGGCGGTCGGACTGCGGGTG 193418 29 100.0 32 ............................. GCGTTCACCCAGCCGTACTGGCTCGACTTCGC 193357 29 100.0 32 ............................. GAACTGGTGGCCGTGGTGACCGAGGCGCGCAA 193296 29 96.6 32 ............................G TACTCCGCCGGGCCCGCACCGGGTGGCCGATG 193235 29 100.0 33 ............................. TTGGACGAGGTGGCGGACCCGTTCGACATCGTG 193173 29 96.6 32 ............................T TCGGCGCGCTCGTACCGCCGGCTCGGGTACGG 193112 29 93.1 32 ..............T.............G CTCGGCCGCGACGACCTGCGCATCGTCGGGGT 193051 29 96.6 32 ............................G AAGTCGCTGCTGGCGGCGCAGCCGACCGCGAG 192990 29 96.6 32 ............................A TCAACCACCACCGGATGCTGTCGTGGTCCGGC 192929 29 96.6 32 ............................A TGGTGCCACCAGTACTGCGCCAACCATCACCC 192868 29 96.6 32 ............................A GGGAAAGCCCCGAGGAGAGCGTCAATTTCTCC 192807 29 96.6 32 ............................G ACGTTGCGGTTGACACTCTCGCGGGTCTTGCC 192746 29 96.6 32 ............................G GGTCTCGACTCGGTCGACCGGTTGATCGATAA 192685 29 100.0 32 ............................. TGACGGAGGCTGCCGCCCCGATGGCCCCGAAG 192624 29 96.6 32 ............................T ACGTTCGAGCAGCCCTCCATGTCAGTGCGCTG 192563 29 96.6 32 ............................G CAGCTGGCCCAGGCCGTGCTCGGCGGCGCCTC 192502 29 100.0 32 ............................. GTGGCGCGCACCGAGACGCTCGACGCCTACCG 192441 29 96.6 32 ............................T TGACCGTGGCGTCGGTGGTCGGACTGCGGGTG 192380 29 100.0 32 ............................. ACCTCGGCGATCCTGTCTAGCGTCCAAGCGAA 192319 29 100.0 32 ............................. AGCGCCGCCATCATCGCGGCCATCTCGCCGGC 192258 29 100.0 32 ............................. GTGCTCGGCCGGATAAAGATCACGAAGCCGGA 192197 29 100.0 32 ............................. TCGACGTGATGCTCGACGTCCTCAACGGAGTC 192136 29 96.6 32 ............................T CGGTCGACGACCACAAGATCCTGGGCGAGTCG 192075 29 96.6 32 ............................G CCGCCTACGTCCTACGAGGCAAAGGCTGCGAC 192014 29 96.6 32 ............................G CTGGAAGCGCGGGGTTCCGTGCTGTCTGGGCT 191953 29 96.6 32 ............................G CTGTTCGAGCTGGAGACCGACGCCGGCCTGGT 191892 29 100.0 32 ............................. TCGCCCGTGACCGGGTGGAAGCGCACGATGTG 191831 29 96.6 32 ............................G ACCGACACGATCTCGGTGGGGTGGATCAGGAT 191770 29 100.0 32 ............................. GACTCCGACGAGCCCCGCTCGGCGTTGTTGAC 191709 29 100.0 32 ............................. AGGTCGTGGCCGAGGACGTTCGTGGTGTCGAG 191648 29 96.6 32 ............................G GTTAGACACGACCCCCGACAAGTTGCCCGGCG 191587 29 100.0 32 ............................. TCATCCACAGTGGAACGCCGACGGATCCGTTA 191526 29 96.6 32 ............................G ATCGAACGAACTAGGCTGCCCGACCGGACGAC 191465 29 96.6 32 ............................G GTTCGCCACGTCATCGGCGGTGGCCGGATCGA 191404 29 96.6 32 ............................T GGCGGGCGCACGGCGTGCACAGCAGGGACTCG 191343 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 108 29 98.3 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TCGCTTGGCCTCTGGGACGATAACGGCTTCGAGGTCGCTGCCGGTCGCAACTACGCCGACATCGGCGACGTCGACTTCTGATGACCGTCATCATCCTCACCGCGTGCCCGCCCGGCCTACGTGGGCACCTCACCCAATGGTTGCTGGAGATCTCCGCGGGCGTGTACGTCGGGCACGTCAGCGTGCGTGTGCGCAGCCGATTGTGGGCTCGGGTGGTTGAAATGGCCGGTCCCGGTCGTGCCTTGATGCTCTTTGAGGTACGCGGCGAGCAGCGACTTTCTTTCATGGCCCATGACCATCACTGGATTCCAGTTGACGTGGATGGTGTGACCTTGATGCGCCGCCCCAGCGAGCCGTCGGCCAATCCGGCGATGCCAGCGGGCTGGAGTAAGGCGGCTAGACGTCGCCGGTTCGGGCACCGCGGACGGTCGGCGTAGCCTGCGTTGCGTGAAGTGAACGAAATCCGAGATCTGGATCTTCAGAACCGCAGGTGAACAAGT # Right flank : CGGACCGTGTTCGGCCACGGCGTCCACTGGCAGCCTCGTCGTGCCCGGTGCTCAGCGGTTGGCCGCGTCGGCGAGGGCTCGCTCCACCGGGACCGGCCGCCCCAGGTAGAACCCCTGTCCGAGGGGCACGCCGCACTCGACGAGCGCGTCGCGCTGCTGCGCCGACTCGATCCCCTCGGCGATGACGGTGCAGCCGTGCTCACGTGCGAACTCGACCAGCGAGCGGATCGAGGCGCGGCGTGCATTCTCTGCCTCGACACCGGCCAGCGCCGCTCGGCCCAGCTTGAGGAAGCCCGGCTTCAGTGACTCCACCCGAGCCAGGGAGTCGTACCCCGCGCCGGCGTCGTCGACCGCGATCCGCACCCCGGAGGGCAGGCGGTCGAGATCCGCCCGGTCGGCTTCGGTGATCTCCAGCACCAGCGGCCGGGAGCTCTCCGCCAGCAGCGGTTCCAGCTCGCGCGGCCGCCGCAGCAGGTCGCTGGAGACGTTGACCGCCAGCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218274-214179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATVW010000001.1 Planosporangium flavigriseum strain TBRC 198 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218273 29 100.0 32 ............................. TCGTTGAACCAGGCCGGCGGGCCGGCGCTGGT 218212 29 100.0 32 ............................. AGAGCGGCCAGCGCTCCACCGCCAGCCGCCCC 218151 29 100.0 32 ............................. AGAGCGGCCAGCGCTCCACCGCCAGCCGCCCC 218090 29 100.0 32 ............................. TGCCCCAGCTGCGACGGATCCGGTGGGCCGTC 218029 29 96.6 32 ............................G GCGGTCGCCCCGGGCGACCAGGGCAGCGGCGC 217968 29 96.6 32 ............................G CTTGACAGCCTCGCCGACGCGTCCTCCCGCAT 217907 29 100.0 32 ............................. CGTCCATGGACCGCTGGACAGTGAACGTCTGC 217846 29 100.0 32 ............................. CTGGCACCCGCTAAATAACTACATAGTGCGTT 217785 29 100.0 32 ............................. TACCAGCCGGCGCAGGTGCTGCCCTACATCGG 217724 29 100.0 32 ............................. CAGCTGACCCCGTGCCAGGGCTGGTTGAGCTG 217663 29 96.6 32 ............................T GCTTCGGCGATCTGCTGACCCACCCGGTAGCC 217602 29 96.6 32 ............................A CGTCGGTGGGTGTCGCGGTTACGCCGTGACCG 217541 29 100.0 32 ............................. CCGGCGGCCTTGACTTTGGCCAGGTCGATGCC 217480 29 96.6 32 ............................G CCGAACGGGGCGACGATCACGCCGTCGGTGTC 217419 29 96.6 32 ............................G TACTGCACCGGGCCGGTACGGCCGGTGAAGCG 217358 29 96.6 33 ............................A GCCCAGCAAGCGAGTACCCCGAGCCCGACACCC 217296 29 100.0 32 ............................. CCGGGGGAGTGGCAGATGGAGCAACGGGCCGC 217235 29 100.0 32 ............................. GCGATGCGCGCCTGCTCGGCCTTCACGCGTAG 217174 29 96.6 32 ............................G GACGCCACGACGTGGCTGGTGCGAGACCACAA 217113 29 100.0 32 ............................. CTCGACGCGTACACGGTGCTGCCCTAGCAGGG 217052 29 100.0 32 ............................. CGTCGGTAGGTGCCGGTCGCGGTTCCCTCGGT 216991 29 96.6 32 ............................G GAGGCCACGATGTATCAGGTAATGGGGCCGGA 216930 29 100.0 32 ............................. TTGTTGGCGTCCCGCCAAACTGGAGAGCATGA 216869 29 100.0 32 ............................. CTGTGCACCGGTGTGGCCACCGAGATGGGTGA 216808 29 96.6 32 ............................G CCATGAGCCTCGAGGAAGCCGGCTACGACGTC 216747 29 100.0 32 ............................. GCCTGGTAGGACACGCGCTCGCCGGGGGTGCC 216686 29 100.0 32 ............................. CGGGCCGGCACGCCGAGCATCCGCAACGATTT 216625 29 96.6 33 ............................G GTTGACCCATGGGCTGGACAGCTGGCGGGTGCC 216563 29 100.0 32 ............................. CAGCGCGCCGTCCTGCACGCGGGCGTCCTCGG 216502 29 96.6 32 ............................A CGAGGTCGCCGGGCATCGGGTTGACCACCGGG 216441 29 100.0 32 ............................. GAACTGGTGCGCTGGCTGATCACCGCTGGAGC 216380 29 96.6 32 ............................G CTACGCATCCGGGGGCAGGTGGCAGCCAAGAC 216319 29 100.0 32 ............................. GTGAACCGCACGCTCTCGCCACCGTCGCCGTT 216258 29 100.0 32 ............................. GGTCGGCGCGGGTGAGCACACCACCCGCGTCG 216197 29 100.0 32 ............................. CGTCGGGCTACGGGCGGGTACCCGGCGCCGGG 216136 29 96.6 32 ............................T CGATCACGGGTCCGCCGCCGAACGGATCAGGC 216075 29 100.0 32 ............................. AGGGCCGCGTCCACGAACTCATGGCCCCCGCC 216014 29 100.0 32 ............................. TCCAACGGCGGGTCGCGCGCGTTGGGCGAGGC 215953 29 96.6 32 ............................T CGCCGGGGCCGGTGACCCATGGTCCAGAAGAA 215892 29 100.0 32 ............................. TGTTGGTGGTGCTGATGGTGTGGGTCGCGCCC 215831 29 100.0 32 ............................. GACACGGCGCTGCGTCACTCCGCGGTCTGGGC 215770 29 100.0 32 ............................. TACGCCCCGAACTTGCCGACCGAACGTCAAGA 215709 29 93.1 7 ...........................GG AGACACC CAA [215682] Deletion [215674] 215670 29 100.0 32 ............................. GGTCACACGGTGATCGAGTGCCGCGGCGGTAC 215609 29 96.6 32 ............................T GAGTCGATCGGCCTGCTCAACCCGTCCAAAGG 215548 29 96.6 32 ............................G GTCGTGTGCCGCTTCAGCCGGCCGCGGGCGTC 215487 29 100.0 32 ............................. TGCTGGCTACCGAGACACGGCTGCCCGTAGGC 215426 29 100.0 32 ............................. TACATCTATCACGGGCCGGACTGGGACCAAGG 215365 29 100.0 32 ............................. GGGGTCATCTTCCACAAGTTCGGCACCGACGA 215304 29 96.6 33 ............................G CGCAAGCGGGGCGTCCGGGAGCTGGTCAACGCA 215242 29 100.0 32 ............................. CCGGTCTGGCCTCCGGGTCGGCGCAGCTCACC 215181 29 100.0 32 ............................. GCCCTGACGTGCTGCAAACGGTGACCGGGAAG 215120 29 100.0 32 ............................. GACGCCGGGAACACCGCCATGCCCCGCTCGTC 215059 29 100.0 32 ............................. TCCGCGCCCCGCTCCGCCCCGCGTCGGCCGAC 214998 29 96.6 32 ............................A CCAGACTCACGCTCGCGACGACCACCAAGCCA 214937 29 100.0 32 ............................. GTCACCGCTGCGACGAGAACGGTTGCACCGAG 214876 29 100.0 32 ............................. GTGTCGGTGCGCACGGCCAGGACCTCGTTGAC 214815 29 100.0 32 ............................. GACCTGGTCGGATGGGCCGGTGGCCTACCCGG 214754 29 96.6 32 ............................T CAGGGTCGACACGAACAGCGAAGTCGTGTCGG 214693 29 100.0 32 ............................. TCTCGGCTGATGCCCGATCCGTTGGTTACGGC 214632 29 100.0 31 ............................. TCGACCACGTCGATGTCGTGGCAGCCGAGCC 214572 29 100.0 32 ............................. AGCGGCGACGGCGACGGACGACCGGGCGAACC 214511 29 96.6 32 ............................G GTGTCCCGGATCGCCGACACGATCCCGGTGAC 214450 29 93.1 32 .....................G......G GCGTACCGGAGCGCGGCGAAAGCGGCCAGCTC 214389 29 96.6 32 ......................G...... TTACGAGGCTCTCTACCGGGCTCGGGATCGTC 214328 28 93.1 32 ........-...................A CGGCCGCCGACATTCGGAATCGAGTAGGCCAC 214268 29 89.7 32 ...........C.........G..A.... GCCGACCAGCCCAAGACCGACGAGCAGCGGCA 214207 29 69.0 0 ...............C....TCCCAGG.G | ========== ====== ====== ====== ============================= ================================= ================== 68 29 98.0 32 CTGCTCCCCGCGTACGCGGGGATGGTCCC # Left flank : GCATTGATGACGTGGTGGCATCAAAGGCAGCGGCCCTCGTCAGCCGTCGAGAGGTACGCGACTACATCGACGGGGCCGCAGTACTCGGCCGCTACAGCCTGGACCAGCTGCTTGACCTCGCGCACCAGCACGATCCCAGTCTTGAGCCGGCCGACGTCATTTTGGTTGGGGCATACCTGGACCGTTTGAGTGATGAGTGCTTCCAGCGGTATGCGCTCGGTCCTTGACAGCTGGCCGCATTACGAGCCACGTTCGGTGTGTGGCCCAGGTCGGGAGGCTCAGCTTGACAGAGACATGCTGAATCCGGTCTATACCTCGGCTATGGGAGGACCCCAGGCCATCCCCGATGCGCGGCCGCGGCGCCGGGCTAACCTCTCTGGTGATGATGCCCGCTGAGAAGTACGCAGCGACGCCGCTAGGCAACGTGGTCGGCGTAGCCTGTGTTGAATGAAGTGAACGAAATCCGAGAGTTGGATCTTCAGAACCGCAGGTGAACAAGT # Right flank : CCGCGGGTCCATGATGAGAGGCAATGCGCAGTCCCAGCCTGTGCAGACGGCGGTGGTGAACAAGGGCTGCCGGATGCTGGCGCCGGGGCTGCTGATCACCGAGGCGCCGATGGGGGAGAGCAAGGCCGCCTGGCGGCGGTCGAAGTGTTCGCTGCCCGTGGCAGGGTAGGCGGTTGTTGCATTGCGTCGCCGACGCATGCGGCCAGTAACGTGATGTTCCGACGGCCCTAATCTGGCCGGGGCGGTTGCCGGTGCCGGATACCGATTGTGGTGCCCGCGATGTGGGTTTGGCTTATGGCAGGGCTCGCCCGAATGCGGACTGCGCGCGGTTGTGCCAGCACGCTTTGCCCAGCTTCACAACACCATCGTTAAGTCCAGCGCTGGGCGCTCCAGGGCGTGCGATGGTTCCTCGTGGAGTAGTTCGATCAGGAAGAGACGGTGAGGGTACCTGCGGTGAGTCCGTCGCGTATCTCGCGGGCGAGGGCGGTGCCCATCGCGGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //