Array 1 43713-44047 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000028.1 Cronobacter dublinensis strain cro1046A1 contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43713 29 100.0 32 ............................. GATACGTATAACCCAAACGACGATATCGAGTT 43774 29 100.0 32 ............................. CCGCGCATAACTCCACAGAAGCTGGCCGACGG 43835 29 100.0 32 ............................. TCAGCGCGAAACTTACCGTTGAGCGCCTCTGC 43896 29 100.0 32 ............................. TGTTTGAATTAATCATGGTGAATGCTGACATT 43957 29 100.0 33 ............................. TTTGTATGTATTCATCGTTAAGGCTCCTTAGTT 44019 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : TAATGCTCTTTTTCATACTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 389-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000036.1 Cronobacter dublinensis strain cro1046A1 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 388 28 100.0 32 ............................ TAACAAATCAAAAGGAAGCGGCGGCGGTGTTT 328 28 100.0 32 ............................ GGTTTCCCCAGTGACGGTAGCCGTTATAACGA 268 28 100.0 32 ............................ AATACCTGTAGTGTCACATTTTGATTTTTCAT 208 28 100.0 33 ............................ GTATACGGACAAACCTACGGCGGCGCAGCGGAG 147 28 100.0 32 ............................ TGTGAGCATCACAGCGAACGGCGGAACAACCC A [139] 86 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAATACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTAGCCCTTCGATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGCAGGTTGATATCCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACTACCGCTGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGTGCTCGACTTTCACGTTAAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : AAGGTGTGAGCACACATCATTACGACCGCTTATAAGTTCACTGCCGTACAGGCAGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1990-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000202.1 Cronobacter dublinensis strain cro1046A1 contig202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1989 29 100.0 32 ............................. GAACAGGATCAACATGCAAAGCCCGGGACCAT 1928 29 100.0 32 ............................. AACAACTGCGCAAAGACCTGGACGCGGCGAAT 1867 29 100.0 32 ............................. AAACGGCATACGTATAACCCTGGCCCGGAGAC 1806 29 100.0 32 ............................. GTTTATGAGCGCGTCGTCGTAAACGGCGAAGA 1745 29 100.0 32 ............................. TTATCGGGGAGGTATTTCGTTTTCTGTTTCGT 1684 29 100.0 32 ............................. GATGCGCATCTGGGACGACGACTGGATCACGC 1623 29 100.0 32 ............................. CTTACAACATTTACGCCGACTATATCCGAGTT 1562 29 100.0 32 ............................. ATGGCAGGACAGAAGGTGAGCGTCAGCAGCAG 1501 29 100.0 32 ............................. TACAGTATTTGCCGCATCGTTAGTGACGCGCC 1440 29 100.0 32 ............................. GGGCTTATCGAAGAGGCAGCAAGCGAGCCTGA 1379 29 100.0 33 ............................. TTTATTGGCTCCGTTGTGGAACTTGAGTTAACC 1317 29 100.0 32 ............................. GATCGGCCTGGCCCTGCGCGGCGGCCTGGAAA G [1306] 1255 29 100.0 32 ............................. AAGAAATAGAAGAACTTGATGAGCGCGATGCA 1194 29 100.0 32 ............................. ACAATAAGTTTTCATTACCTGGCCTTCAGTGG 1133 29 100.0 31 ............................. AATTTATTTTGCCGCAAGCTATTCAGTATGC 1073 29 100.0 32 ............................. GCTGCGCTCAATCCGTTCATTGGTAATCCTCA 1012 29 100.0 32 ............................. TGATCGAAATGCTCGAGGGCATCGTTCCGAAC 951 29 100.0 31 ............................. GTCAGGAATTTTTTCAGCGCTTTATCTTTTG 891 29 100.0 32 ............................. GGAGTTGACGGCCGCCGCGGTTGCGCGTGAGT 830 29 100.0 32 ............................. CAGCGACCGAGCACAGTAAAGCTTTTGAAATG 769 29 100.0 33 ............................. AACCCGATGAACGCAAGCTTCTGATTTTATATA 707 29 100.0 32 ............................. TTTCACTACTCACCCCCTGTCTCAATAATTAC 646 29 100.0 32 ............................. CACGCCAGAACAGGACACGATAGCTTTTGCGC 585 29 100.0 30 ............................. TATTTTCAACATGGCTGAAAAGACTTAAAT 526 29 100.0 32 ............................. GTATTGCCGCCGCAAAATCTATGGGGGCAAGT 465 29 96.6 33 ............................T TCGGCGGTGACCGCGCTTTATCCCTGTCCACAT C [447] 402 29 100.0 33 ............................. GCCGGGGGGCCGCAGGTTAGCGAACTGGCCGCG 340 29 100.0 32 ............................. CTTGCTTGCTCTTCAATTTGCTGTCCCGGATT 279 29 100.0 32 ............................. AGATCAGCAATTGCTTTCATAAAGGTGGTTTT 218 29 100.0 31 ............................. TGAGTTTGTATTTTCTCTTAACTCCCCAATA 158 29 100.0 32 ............................. GTGCCTGAGGTTGTTTGAATTCGTTCATAAAA 97 29 96.6 32 ................T............ CGCCTGCGGGCGCGTCTTGAATCAGGAGAGTC 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCGGAAACCATGC # Right flank : GGAGGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-772 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000058.1 Cronobacter dublinensis strain cro1046A1 contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14 27 89.7 30 ...G.-...........-........... ACCTGGCACGGCAAGAATCGACGATCTGCC 71 29 100.0 32 ............................. CCACTCAGAATTACTTGCGGATTTGATTTTAT 132 29 100.0 32 ............................. TAAGATGTTTGAGCGTCAGGGTGCCGCTCTTT 193 29 100.0 33 ............................. AAGGGAGATGAAACTTGTGAGTACGGCGTTGAA 255 29 100.0 32 ............................. AGCGCATGCAGGAAAACATCGATTCATAAAAT 316 29 100.0 32 ............................. TGATGCGGACGCGCGGGTCGAAAACTACGTCG 377 29 100.0 32 ............................. TACCGGACGTGGCGGCTACGCGTACCAGGATA 438 29 100.0 32 ............................. CTGCTCGCCGGATCGGTGTCGTCTGTCGGCAT 499 29 96.6 32 ............G................ GCGGCGAGAAAATTGTGCGGCCGATACCTGAG 560 29 100.0 32 ............................. CATTCGGATAGAGCCTCGTTGGTTAATTGAAA 621 29 100.0 32 ............................. ATTATACCGTCGAGGGCTTCCGCGCCATGATA 682 29 96.6 32 ...........A................. CGCTGTCGGTGTTCGCGTGTGAGTTTGACACG 743 29 82.8 0 ..A......C...C......A.......T | G [765] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GCGCTAGCGCCCTG # Right flank : TTTGGAATAGTTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTATTATTATATTTAATAAAAATAATAACACTTCTTAAAATAGCTGATTTGTATTGTGGTTAATGGATTTTAAAGCTTTATTACAATGTCTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTAAAAGGAAATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGTGCGCGATCGTGCTTATAGCCAAAGTCATCATAAGTGTGAACTCTTTGTTAAAGAGGCTATTATTGCAGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCATTGATAAAAGCAGGGTTTTATGAGGTTTATGGGGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 295-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000062.1 Cronobacter dublinensis strain cro1046A1 contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294 29 100.0 32 ............................. AAAATCGCACTCGCAGAACTGGTCTTTATGGA 233 29 100.0 32 ............................. GATGGGACGCCATGTCCAATCAGTTGATGCGG 172 29 100.0 32 ............................. GGTTCGCTGCCGCCGCCATCCTCACCCGTTCT 111 29 100.0 32 ............................. AGAAAAATGATTACTTACATTACCGATCAGCA 50 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : AAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCAGATTCGCTCGCCGAAGCAGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGTGTTAACCGACGCATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCGTTAAGAATCAGTAGGTTAACTGCTCTTTTAAGACTGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAAGTTCCTTATAGAAAAGTTATATAGTTTTAGA # Right flank : GTCTAAATCGGAGCATTGCAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26562-26105 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000062.1 Cronobacter dublinensis strain cro1046A1 contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26561 29 100.0 32 ............................. TGTGGGTGGTGGCGGTGTCTTTGTCGCGCAGG 26500 29 100.0 32 ............................. ATCATTATCAATGTGTTAGCGTAGTCCGAAAC C [26495] 26438 29 100.0 32 ............................. AACGCCAGACGCCGGATCAGCGAGAAAAAATT 26377 29 100.0 32 ............................. CAGTTTCCGCCCTGCGCGTAGGTGGTGGCGAT 26316 29 100.0 32 ............................. TTCCCAGGCAGCAACGCCTTGAACCATGACGT 26255 29 100.0 32 ............................. ATAACCGCAGCCGCGCTCGTTAACGTCGCGCA 26194 29 100.0 32 ............................. CAGGCGCCGACCACTGTTGAAATGACCGTAAT 26133 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAACCGCTGCACGGTGATGTTTTGCCCTGTGCTGGCT # Right flank : AACCCATTCGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26-355 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNY01000075.1 Cronobacter dublinensis strain cro1046A1 contig75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 ............................ GTAGCGCCGCTGGCCATATTGTTGATCACGAT 86 28 100.0 32 ............................ TCATCGCAGTTCGCCCAGCGCGGATCTCTATT G [106] 147 28 100.0 32 ............................ TTTGTAGACGTAAATCGCGACGTCGCCGTAAA 207 28 100.0 33 ............................ GCGCTTCCACCTGCTTGCAGATGCAGTAATCGG 268 28 100.0 32 ............................ TGAAGGCGCTGACTGCGATTTAATGCGCTGAC 328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGCTCGCAGCGAATCGGCGTCGAGG # Right flank : ATGCCATTTTTAATGCCATCATCGAAGGCAAAAGCCCATACCTAAAGATTAATAGATAAACTTCTTTATTTATTCGTGCCCTTTGACGTGGCAGAGTGCATGACGGCCGTGCGCCCGGACTGATATATTTTAAAAATTAAAGGGATGTCACGATATGGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAATCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGAGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //