Array 1 42614-42774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 42614 29 100.0 36 ............................. GCTGCTCGCTCGTGCGCTTCTTTCAAAGCCTGCAAG 42679 29 100.0 38 ............................. AATTTAAATGAGGAACTCTAAGACTATCTATATTTGAA 42746 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 GTTTTATCTGAACTATATGGGATAGAAAG # Left flank : AGAAATATCTTTACTGGAGCCAACTATCTACGTTCGAAGGGGAAATTTCAGAAGGAAAACTTGCACAATGTATGGCAGAAGTAGATGAGGTTATAAACCCTGCTGAAGACAGTATTTATGTTTATGAGGTAAAAAATCCTAAGAATATAAAGAAAAAAGTTTTAGGAATAGAAAAGAATTATATGGACAATTTCTTGTGATAAAATTTTTTAGGTTACATGGAAAGTGAATATGGTTCTCTGATGAACAGTCTATTTCGGAGAAGTGGATTAAATAATAATAGTTATTAATAAGTTTTGCATTTTGAGTAGAAAATATATTTTTGTGTAAGTTGGCTTTTTACAAGGATTAGCGAGAATATAATAGAAAATATATTTGCATTACTAAAGGTTCACTGCAAAAAACTACCTTCAGCGAGGACTTAAGAGAATTTAAAAAGCCTCGTTAAGCCTTGAAACTACTTGCCAAAATAAAATTTTTTTACTAAACTTAATTAACGG # Right flank : GTTCCAGCTGTCATCCCACTTTAAAATCCCATTCTTTTCTTTTTGGTTATTATATCTTTCAAACGTTTTGTATTTTGTCTTATGTTTTCATCTTTAAAAACTGCAGATACGACAGCAATATTTTCGCAACCTATATCTAAAACTGCTTGCAGATTGTTTTCATTTATTCCTCCTATTGCGACTACAGGTTGAATAGAAATTTCTATGGCTTTTTTAAGTTGTTCAAGTCCTGCAAGCTGGGCGTCTTCTTTGGTTCCTGTCGGGAAGATACTGCCAAAACCTATATAATCAATGGGAAGTTTATTTGCCTCTTCAACCTGTTCTATGTTTTTTGTAGACAGTCCAAGGATTTTATCAAAACCGATTAATCTTCTAACCACTTCAACATCTAAATCATCCTGTCCCACATGAACACCATCAGCATCTATAGCCAGAGCAATATCTACTCTATCATTTATTATTAGTGGTTTGTTGTATTTATCACATAATTTTTTTATTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATATGGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 110439-109533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 110438 30 100.0 39 .............................. TAAAAGAGCAATACAAAGGAATGAAAAATTATGGAAATT 110369 30 100.0 36 .............................. GGTCTAATCAGACGGGTTTGGTTCCTGTTTCTGACA 110303 30 100.0 35 .............................. TCCTGCTCCGTCAGACACTACTGGAGACACGACTG 110238 30 100.0 37 .............................. TGAAATATTGTTTGCTGCGGCTAATGCAGCTGCTACT 110171 30 100.0 36 .............................. TTGCAGAACCGCATCTACCACACTTTAAAATGCCGA 110105 30 100.0 39 .............................. GTCTTTACATCCATCTCAACTAAAGCCTTGTCACTCATT 110036 30 100.0 36 .............................. AAATCTTTTTCTGGCTCTATTGCTAACCCTATACTA 109970 30 100.0 43 .............................. AGTTCACAGCCTCAAAAGCTTTGCAAACAGCTGTTAATGGCTG 109897 30 100.0 36 .............................. TCCAAATGCAAAAATATTATTTGAAAGAAATAGAGC 109831 30 100.0 40 .............................. CTTCAATGTCTTCACCAGGATTTAAAACCTCAACCATCCC 109761 30 100.0 36 .............................. ACAAAAGTCATTATAAATGATTTTGCCATAGATATT 109695 30 100.0 36 .............................. AAGTAAAATGGTAGTTGCAGTTTCACACTAAAAGAT 109629 30 100.0 36 .............................. GGAACTTTACCTTCTTTAAGTTGCTGATACTCTTCA 109563 30 90.0 0 .................G.......TT... | C [109536] ========== ====== ====== ====== ============================== =========================================== ================== 14 30 99.3 37 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : TTTTTCTTTACAGCCTCACCTGAAGTTAGAGCAGAAAGAAGATACAAGGAACTAAAGGAAAAAGGATTAAATATAAGCTATGAAGAAATTTTAAAAGAAATTAAAGAGCGAGACCATTTAGATGAGACCAGAAAAGATAGTCCCCTAAAGCCTGCCCCAGATGCAATAATAATTGATACTACTGATAAATCCCTGTCTGAAGTTTTTCAGAATGTTTTAAAAATTATTAAAGATAGATTAAAAAATTCAGGATAAAAATTTGAGTCTGTCGATCGCAGATTTTTGAGCCTTAATTGAGATAAAATCTCATAGAAAAATTAGCCAAAATTCAAACCTCAGCTTTGTGTATCAAGAATTTGTCGATCTCCAGGGATTTTTGCGGGATTGGAGGTCGACTGAAAATTAATTTAATTTGACAGCAATTTAAATTTTTCGTATATTTATTTCCAACAAGATATATCAACGGCTATTTGACAATAGAATATGAAATCAATTTCAGC # Right flank : TTAAAGGTTTATCAGCCTAAAACTTTTTAAATCTTTATATTCTGTATAATCAAAACAGGTTCTATTATAATAGTCATTCATAAAATCAAATTTTGAGGAGTTTATTTGAAAAGCCTTATAAAGTTTTCATTCTCCAGATTTTCTGAGATTTACGATAAGGAAGCTGCTCTTCAAAAAGAAGCAGCCAAAATTTTGATAGATTTCGCCCAGATTGAAAATGGAAAAGGCTTAGATCTTGGATGTGGCACAGGATTTTTATACAGATTTTCAAACTGGCAGGATTTGACAGGTATAGATATAGCCCTTGATATGCTAAAGTTTTATAAAAAATTTAACAACAACTGCATTCAGGCAGATATGGAATATCTTCCCTTCAAAGAAAACACCTTTGATTTTGTTGTTTCTAATTTCTCAATTCACTGGGCAGACCTGAAAAAAACCATAAAGGAAGTCCAGAGGGTTTTAAAATTAGAAAGATATTTTATTTTTAACATTCCAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 489034-489356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 489034 35 100.0 34 ................................... AACCTGTCCCCTTCTACCTGTATCCACCAGAATT 489103 35 100.0 36 ................................... TCTTTTATCGTTTCATGTATTTTCAAATATCCTTCT 489174 35 97.1 39 .........A......................... ATGGCATTGACAAACTCAGCAAAATTCATTTCCGTTATA 489248 35 91.4 39 ................T.G..G............. TTAATCATATACCCAAAATATTTTCCAAACCTATCTTCC 489322 35 88.6 0 ................T....G.........T..T | ========== ====== ====== ====== =================================== ======================================= ================== 5 35 95.4 37 CTTGAAACTGACCCGCCTAATAAGGGTATTGCGAC # Left flank : AATTATTGAGCTTTGTGGAAATAGAATTGTATCTTATAAGGAGCTTTTTCAGTTTGCTTTAGGATATATAGGAAGAAAAAGACCTGTTTTTGAAATGCCTCTTTCTGTATTACAAATTATGGTTCCTTTTATGCAGATATTACCGGAGCCGCCTGTCACACAGGATCAGATTTATTTGCTTGAGAAGGATAATGTTTGCACAGGCAAACTAAAAACCCAGAAAGACATTCTGGGCTCTGTCCGAAACCCGTTTAAGTTTTAAATAAAACATCTATGAATTTTTTAAAAATCTGACATCTAATCTGTACCGGATAGGAATATGATATAAATCATAAAATCCTCTCTAAGGGGCTTAAAATCTGGATTTTGTAATTGAGACAATATTGAGATTTTAAATTTGACAAAATTTAGAAAAATTAGTATTCTAATAACAGGTCTGTACAGAGCAAAGGTTTCTTGGAAGCTGAATATGTTGATTTTCAAGGATTACAGAGGGGGCT # Right flank : TAGTTGGTTATAAAAACTTTTTGACTAATTAATCGGGAATAGTCTTGAAAGTTAGAAACCAATTTGATTATTGAAAATTCCTCAAAATGCTTTTATTTTGCACGAAATCTGATAATATTCATCTTCCTGCCTTGAAGTAAAAAAATGCACTTCTCCTGAAGCACCAAATAAACATCCCAATACAAAAAACTGATATCACAAAGAAAAAACTTTATATAGCAGCTCCTTTTAATACATCCTTACAACTACAGTTTAGCTCTTCTGGAAGATTTTCTATAAACCTCAGAACAAGCTGTTTAATCTCTTCATTCTTTTGGTGCATCATCTGGATAACTTCATCTGAAGTCAATCTTTCCTCTGATATCCCTGCCGCAAGATTAGTAACCACGTTTACAGAAGCAAAATGCATAGCAAGTTCACGGGCTAAAACTATCTCTGGGACAAGAGTCATTCCCACAACATCTGCACCTAAAAGCCCAAGAGCTTTTATTTCAGCAGCC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTGACCCGCCTAATAAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 497337-497967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 497337 30 100.0 36 .............................. ATCAGGTAAAGAAACTACAGACCGGCACAACTGCAC 497403 30 100.0 37 .............................. ATAGAAAAAGAAATAGAAAAAGAAGATTTAAAAGACG 497470 30 100.0 37 .............................. ACATTCACAGAACACTCTGGAGCGAACTTCAATGAGT 497537 30 100.0 35 .............................. AAGAAATAAAAATAAATGAAGAGCAGAAAAAAGAA 497602 30 100.0 40 .............................. TGAGGTGATAAGGAAAACCGATTGATTTCATTTTCCTGAA 497672 30 100.0 37 .............................. CGGTCAGGGTCTAACATCAACTGAGGCTGAGAAAAAG 497739 30 100.0 35 .............................. ACTAAATATATGTGGTCTTTTATCCTTTTCAGAAT 497804 30 100.0 37 .............................. AACACCCTGCCGAAATTTGCACCAACGGGCAGTCCTA 497871 30 100.0 37 .............................. AATCTTTTCCATTCTCCAGCCCATTCTAATCCTACTT 497938 30 76.7 0 ........A........G....GC...GGT | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 97.7 37 GTTTTTAGCGTGCCTATAAGGAATTGAAAC # Left flank : TTGAAAAAGCCTCTGATAACATAGAAAAAAACATAGAAGAAGAACTGCCACAGATTTTGTCCCAGCTTAATGTGGAAAAGATGGTTGTTGACACACTTATGGAAATGGATATCCAGACCCTTGAGGAGATTGTTATAGGTTTTTCCGAAAAACAACTAAAACATATTACCTATACAGGGGCAGTTCTGGGATTTTTAATTGGGTTATTACAGAGTATTTTATATTTGTTACACTAACCTTTGAGAAAAAATTTAAAAATTTGAGTCTGTCGATCGCAAATTTTTGACCTTTAATTGAGACAAAATCTCACAGAAAATTTGGCTAAAATTTAAATCTCGGCTTTGTATACCAAAGGTTTGTCGATCCCTGGGGATTTTTGCGGGATTGGAGGTCGACTGAAAATTAATTTAATTTGACAGCAATTCAAATTTTTCGTATATTTATTTTCAACAAGATATATCAATGGCTATTTGACAATAGAATATGAAATCAATTTCAGC # Right flank : TAAAATCTTTATAAATTCTTTCTCAGTTTGGGGTCTAAAGCATCTCTTAGAGCGTCTCCTAGTAGATTAAAAGCCAGAATTGTTATAAATATTGTTATCCCCGGAGCAAGTATCCACGGATAGTTTGATATTGCTGATATACTCCTTGCAGCTGCCAGCATATTACCCCAGCTTGCATAAGGCTCCTGAATACCAAGACCAAGCAAAGAAAGAGCACTTTCCCCTAAGATATATCCTGGAATTGACAAAGTAGCAGCAATCAGCAGATAAGAAAATGTATTGGGAATTATATGACGGGTTATTATCCTGAGAGAAGATGCCCCATAACTTTTTGCCGCAAGGACAAACTCTTGTTCTCTGATAGACAGAACCATTCCCCTTATAACCCTTGCCAGACCAGCCCAGCCAATAAACGAAAGAATAACAACAATTAAGAAATATACCTGCACAGAAGACAGGGTAATAGGAAAAATAGCCCTTAAAGCCAGCATAAGATAAAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 531951-532279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 531951 37 100.0 38 ..................................... TTTCATGAAGGGGAAAAGTTTCTATAAAACGTTATCTA 532026 37 94.6 35 AA................................... CTACGAGCTCACGTAGGGCTTTGAGGGCTTCGGCC 532098 37 100.0 38 ..................................... CGGGGACGGGGACCGGGGAGCAAGTACCCACCGGTGGC 532173 37 100.0 34 ..................................... TTATAAAACTCTGGATAATGTTTCTTAATATATT 532244 36 81.1 0 .A................-.AA.G.....G...T... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 95.1 36 CTCTGGAACTGACCCGCTGTTTTAAGGGTATTGCGAC # Left flank : AGCCTTCCCCTTTAAAAAGATGGTCAAACAGAAAAAAGAAAAAAATGATTGTTCCAGCCTTTGAAGGAAGTTTTAAGCTAAAAGGTGATATTAATGAGATATATCCATACCTGTTAATACTTGAAAATATAAACCTTGGAAAATCCACCAGCTTTGGTTTGGGTGTAGTTAGAACAGATTTATAAAGGTTGCATACAGATTTATAATCGTGATAAGTTATAAATAAGGAATATGGCTACCTGACAAAAGAATATGATTTATATCATATAAAAATCTCTACAAAATCAGGGTGTAAATTTTAGCGTGATAGACTAAAATTTTAGCTAATTCTTGAAAATAAAGCTTTAGCGGATTGCATAAATTTTATGCAGATAAAAATTTGTAGAAATTTCACAATTTGGAGTAGAATATTGAAAATAAAGGCTGACAAGCAAATTTTGGAAAAATTTATAAACCCATTTAAAAACATTAAATTACCCGCCAAATCGCAAAAATCTAAG # Right flank : CTTTTACGATGCAACAAATTAAAGTGTTTGAACTAAAACTTTCTCATTAGTTCCCAAAATCCTTCACCAAACTTGCAAATTATCCCCAAAAATCCCAATTTATCTTAAGAAATCCTTATGATGGTTATCATGGCTTAAAATAATAAGGATTTTATTCTATACTTGAATAAAATTTTGCTAATCAGGAGGATTAAATGGCACTTCAGGGAGTAATGGACACTCTAAAAAATGCAAATCTTGAGGAAATTGGCGTTAGCTTTTCACTTGCAGACCTTTTAAGAGACCTTAGAATAGATGGGAATAACGTTTACATAAAACTATTTTCCCCAAGTGAAAAATACCATGATTATCTCAAAGAAAAAGCAGAAAAAGTATTAAAATCTATTGGAGCCGAAAAAGTAGAAGTTGAATTTACTTCAGAACCACCGAAACAACAACAGCAACCTCCACAACCACCTCCACAAGAAAACCCTTTTGAAAACAGAAGAAGAATTCCTGGA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGGAACTGACCCGCTGTTTTAAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 737373-737594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 737373 28 100.0 38 ............................ GTCCGTAACTTTCTTTATGTGTCTTTTAAGTTCCTCAA 737439 28 100.0 36 ............................ GTGAGAAAGATTTTATTTTTGATACTCTCAGTAGTA 737503 28 100.0 37 ............................ GCTTGGAACTTCTAAAAAATCTTCTATCTGTTTTGCT 737568 27 96.4 0 .......................-.... | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 99.1 37 GTTTTATCTGAACTAAGTGGGATAGAAA # Left flank : ACAAAGCTGCGGCATTTTATATATACAAAGTTTTACCCTATTTTGGTGGGCTTATAACCGGAAATTTTGATGCCTATAAATATCTGTCTATTTCGATACAAAACTTTGTTCCTCCAGAAATAATGAAACTGGAACTGGAACAAAACAACCTTAAAGTTGTGGAAAAAGAAAAAATATTCCCTGATGTTTATATATTTGTGGCGAAAAAAGAGTAAATCTAATATAATCAATTAAGGGCTACATGAAAAATGAATATGAATATTAGAATAAATATATTAGATATAAATCTTTTCTGCTTGCATTTTGAATAGAAAATATATTTTTGTGTAAGTCAGCTTTTTACAGGGATTAGCGAGAATATAACAGAAAATATGTTTGCATTAATGGAGGTCTAATGCAACTTAATACCTCCAGCAAGGATTTGGAAAAATTTTTAAACCTCTGCTAACCCTTGAGCCACACTTGCCAAATTAAATTTTTTTTCTTAACCTAATTAACGG # Right flank : AACCTTTTATCCAAGCTAAATTCTTCTCATAACAAGTTTTAACTTTTCTACAAATATTTGATTTTCTTCAGGTTTACCTATAGAGACCCTCAAACTATTTTCCATATAAGGCAGATGAGACATATTTCTAACAAGGACACCTTCCTCAATCAGCATTGAATGGACAAGATTCCCATCTGGAACTTTTATCAGGAAAAAGTTTGCATCTGAAGGGTAAACTTTGACATTTTCTATTTTAGATACCTCTTCCATTACTTTTTCTCTTTCCTGCTTTATTATTTGAATTTGCTCTCTTATAACCTCCCTACCTTCACTCAAAACTATTTTCCCTATTACCTGTGTAGGATATGTGATATTAAAAGGTGGTCTTGCCCTGTCCAGTAACGAAGCAATTTCCTCATTAGCAATTAAAGCTCCTAATCTTATACCTGCCAGACCTATTTTTGACATTGTTCTAAGAACAACAACATTCTCAGAAGATAGGGCTTCTTTCACAAAAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTAAGTGGGATAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 7 794835-795749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 794835 30 100.0 36 .............................. TCTATCACTTCAGCCCACAATTTGTATCTTTTCCCA 794901 30 100.0 38 .............................. TCCACTCCCGTAATTTTTGAGTAGTTCCTCTCTCATAC 794969 30 100.0 40 .............................. CTCGCAGCTCTGATTGTAGTTGATAATTGAAACTGTGCTG 795039 30 100.0 43 .............................. GTTCTTCCAGTCTTTTGTTTTCCATTTCTCTTCCCTCCTGAAA 795112 30 100.0 36 .............................. ATTATTATTTCTTTTGGAACTTAGCCATTTCTCTCA 795178 30 100.0 36 .............................. GCCTGCCCTCCTTACTTTACAGATTACACCTATACG 795244 30 100.0 36 .............................. TGACAGCATCGTATAAATCTTCAGGGTCTATACGAT 795310 30 100.0 37 .............................. GCAGCTACTACTATTTTATTTTCAAAGTTCTCAGGGA 795377 30 100.0 36 .............................. AATATAATTAAAAATTATTTATATTCTTCAATTTCA 795443 30 100.0 40 .............................. AGTTTTTCTCCTTGCAATTTACCTATAAGAGCCATTCCAT 795513 30 100.0 36 .............................. TCTTTTTCAACAAGAATAACCATTTGTTCATCAAAC 795579 30 100.0 41 .............................. ATTTCTTTTTGTATAGTCTAATAAACTTTTCTACTCTTTTT 795650 30 100.0 39 .............................. TCAAGAACATAAATCAGCTGTTGATAGATACCAACCAGA 795719 30 86.7 0 ........C................ATG.. | T [795746] ========== ====== ====== ====== ============================== =========================================== ================== 14 30 99.0 38 GTTTTTAGTGTGCCTATAAGGAATTGAAAC # Left flank : CTAAAATAGAAAATAATTTTTATTACGTTCCAAATTCCCTTCTTGATGAGTATTACGATTTAGAAACAGGTTTTAAAACTAAGGGAAACTTCTATCTCCAAATTTAGAAAAGGCAGGAGAAGCTCCTATTCTCTAAGGAGCCTCACAAGAAGGATTAGGAGTAGTAACGTATAAACTTCCTGATCCAAATTTATCACCTCCTTCGTTAATTATTTCTTTATAAAGAGTGCCTATAAGGAACTGAAACCATTTTCAAAATTTGAGCCTGTCGATCGCAGATTTTAAACCCTTAATTGAGACGGAATCTCATAGGAAAATTGGCCAAAATTTGAATCTTAGCCTTGTGTATCAATAGTTTGTCGATCTCCCGGGATTTTTGCAGGATTGGAGGTCGACTGAAAATTAATTTAATTTGACAGCAGTTCAAATTTTTCGTATATTTATTTCCAACAATATATATCAATGGCTATTTGACAATTGAATATGAAATCAATTTCAGT # Right flank : CGTTTAGAAAGGTATAAGTTAACTTTAAAGTTATGGGGGAGTTGCAGAATATTAACGGGACATTAATATGGTATTACTACATTTGTCCACGGGAAGTTTGGCTAATTGGACATGGTATTGAAGCTGACCAAGAAAGCGATTTCCTTTTACTTGGAAAACATATACATGAAATCTTTTATAAAAGACAGAAAAAAGAATTTATGATAGACAATACAATCAAAATAGATATTCTCCCCTCTAAAAAAGTCATTGGAGAAATCAAAAAATCATCAAAATACCTAAAAAGTGCAAAAATGCAAGTAGCATTTTATCTTTACTATCTAAAACAAAAAGGAATAAATATAGAAGGCGAACTTCTTATACCAGAGGAAAGAAAAAAAGAAAAAGTAAAGCTAACTCCAAATTTAGAAAAAGAACTTGAAGAAGCCATTAAAGAAATCAAAAAGATTTTAAAAATGGACAGACCACCACGACCAAAGAAAATACCTTATTGTAAAAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGTGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 8 873044-873369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 873044 35 100.0 40 ................................... TTGGCTCGGTGGGCCTTTACCCTCCGGGGACGGGACCGGA 873119 35 100.0 40 ................................... ATTCAAAAGTTGTTACCCATGGCCTCTACCCCTCGGGGGT 873194 35 100.0 33 ................................... CCATCCGGTCGCCGGACCCCGGCCGCAGTCCCA 873262 35 100.0 38 ................................... CTGGTCCGACACATAAAACTTAGTCGGACCGTAAACCA 873335 35 91.4 0 ...............................TAG. | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 98.3 38 CTGGAACTGACCCGCTGTTTTGAGGGTATTGCGAC # Left flank : ATATGTTGAAACTCCACTTTCTGAAAAAATACTTAAAGGAGAGGTCAAACCTGGAGACACCGTCATTATTGATGAAGAAAATGGCGAACTGGTCTTCAAGGTTAAAGAGGAAAAACAGGAAGAGAAACAAGAAGAAAACAAATAAAGAATTAGTTTCCCAAAGCCCCCAATTGGGGCTTTTTTTTGTTGCAAACAGGCTTATAATGGTGTATAAGTTATAACAAAGGATTTGGTTACATGTCAGAAGAATATGATTTATGTCATATAAAAATCTCTACAAAATCGGGGTGTGAATTTTAGCAAGATAGACTAAAATTTTGGCTAATTATTGAAAATAAAGGTTTAGCAGGTTGCATAAATTTTATGCACGTGAAAGTTTGTAGAAATTTCACAATTTGGAGCAAAACATTGAAAATAAAGGCCGATAAGCAAATTTTAGGGAAAATTCTAGACACATTTAAAAACATAAAACTACCTGCTAAACCGCAAAAATCTAAGCT # Right flank : CTATAAATCTGGATTTAGGAATTTTTGGAGTTTATCCCCAAAAGCTCTTATTTTGTCCTTTTTGAAAGATAACTGAAATCAATTAAATAAACCAGTGAAAAGTATAATATTCCCAATTTTTCCTAATATACCTTCCTTTCTGGTATAATTTTTTTTAATATCTTTCTACGGGGAAACATTTGGAAAGCAGCATTTTAGACAGCAATATAGAAGTTGAACTGGAATTCTTGATAACTTCTGAGGATTTAAATCTGGACACTCTAAAAAATCTGCAAGAGAATGATGAAATAGAAATAACAAATCCACAATACATCATAGCAATTAACAAACTTCCCTTCTATATACCAAAAATAAAAGAAGAAAATGGACTTATCATAGGCAAGATATTAAAAATATTAGAGCCTTCAGATGCTTTAAAATATAAAGAAAAATATCTGATATAGGAGAAAAAATGGCAGCTGTTATTTTAGATGGTAAATCCCTTGCAAAACAAATAAGAG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGAACTGACCCGCTGTTTTGAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 909313-909889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 909313 30 100.0 42 .............................. AAGACTTCCCCCAATTATCAGGTTCAGCCCACAGTTCTTTCA 909385 30 100.0 37 .............................. TCATCATCTCCAAATATAATCACAATTTCATGGACTC 909452 30 100.0 40 .............................. TAATCAAGTGTTTTTAATCCTTGCATGATTTTACCTCCTG 909522 30 100.0 38 .............................. TTTCCAGCAACAACATTATTAACAATCATTTGTTTAGG 909590 30 100.0 38 .............................. TTTCCAGCAACAACATTATTAACAATCATTTGTTTAGG 909658 30 100.0 39 .............................. TGTAGTATGTCCTCTCTGTGGTATTTCAAGAAAACTTGA 909727 30 100.0 37 .............................. TTGGTTTTTCTGGCAAAATGTAAGCATCATTAAAATC 909794 30 100.0 36 .............................. TAAAGCTCCCTGTTTGCTATATAATCAAATACCGCA 909860 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 9 30 100.0 38 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : TTATGAATAATACCTGTCAGTCTAAATATTTCAGAATAGCTCTCGTTCCAACAGTTGAGGAATGTAAGGAAGCTGTTAGGATATGGGAAAAAGCTCATAAGGATTTAATTGGGAATTAATGGTGGGCCCGGGAGGACTCGAACCTCCGACCGGACGGTTATGAGCCGTCTGCTCTAACCAACTGAGCTACGGGCCCAAAGGGAGATAATAATATATAACGAACTACTAATATTGTCAATAATTTTTTGGATATAAAAATTTGAGTCTGTCGATCGTAGATTTTTGACCCTTAATTGAGACAAAATCTCACAGGAAAAACAGACAAAATTCAAACTTCAGCTTTGTATATCAATAATTTGTCGATCTCCAGGGATTTTTGCAGGATTGGAGGTCGACTAAAAATTAATTTAATTTGACAGCAGTTCCTTTTTTTCGTATATTTATTTCCAACAAGATATATTAATGGCTATTTGACAACTGAATATGAAATCAATTTCAGG # Right flank : CTATAAAAACCCTCTTATCATCAAAATTTTATCGTTTACTCTCATTTTCACTATTTCCATTTAAAATCCCAACAACAACATTCCTCTAAACAAACCATTTTATATCCTCCTCTTATGACTTTTCTCTTTGAAAAATCCCCATCTATCCTTTAAAAAATTTGGCATATAAATCAGACGGATTTTCCTGTAAAATTAAAGAATAAAGAGGATTTAAGATGGAAATAAAAAATAAAAATATTTTGATAACAGGCAGTGCAAAAAGGATAGGAAGAGAAATAGCCCTTCATCTTGGAAAAGTAGGGGCAAATATAATTGTTCATTATAGAAGTTCCCAAAAAGAAGCACAGGAAGTAGTTAATACCCTTAAAAGTTTTGGTGTTAAAGCTGTTGCTCTTCAGGCAGACCTTGAAAAAACTCAGGACACCCTCAAACTTGCACAGGAAGCCATTAAACATTTTGGACATATAGATGTCCTTGTTAACAATGCCTCAATATACTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 10 1120340-1120107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1120339 30 100.0 36 .............................. CTTTATGGTCTGCTGTTGTTGGTAGTTTATCAACAG 1120273 30 100.0 40 .............................. TGCAACCCTAAATAATCACTTATTCTTAATATTGCAAGAA 1120203 30 100.0 37 .............................. CGTAAAACATCACTCCCCCGGAGCATTGAACAGATAA 1120136 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 99.2 38 TCTTTCTATCCCATATAGTTCAGATAAAAC # Left flank : GATTAATTACAGCATGGTCTAAATAAACAAGTCTGTAATCCTTTGTAAGGATTAACTGTCCTGTAATTCCGTATTTGTCTTCTAACTCTTCAAGAGTTTCTTCATCAAGTTCTTCTCCATCGATATCAGACTCAAGAGTAATAAATCCTTCTTCTAAGGCTTCCTTATCAATTTTTAGTTCAATACTTTTTGTAGATAACTTCATATCTTTCACTCTCTATCTTGCTTTTTAACTAATACAGTATAAAAACAACGACTTTCTTTTCCGATAACAAGCCCTGTAAATTTATCCCTAACCTTTCTGTAGTAAATAATTGCATTTTCCTTTTTATCTAAAATAACCACATCTGGTTCTTGCAACCATTTTGAATAATGTTTCAAAGTATATTCAATATAAGACGAATATTTTTTCTTTTTTAGTGAATGCTTTATATTGAATTTTGTGAAGATTGTATCATTACCTAAGAAATCTTCTACGATCTTTTTAACAGTCCTTGTAG # Right flank : TCATTAATTAGGTTAAGTAAAAAAATTTAATTTGGCAAGTGTGGTTCAAGGGTTAGCGGAGGTTTAAAAATTTTTCCAAATCCTCGCTGGAGGTATTAAGTTGCATCAGACCTCCATTAATGCGAATATATTTTCTGTTATGTTCACGCTAACTCTTGTAAAAAGCTAACTTACGCAGAAATATATTTCCTGTTTAAAATGCAGAACTTATCAATAACTATTATTATTTAATTCAACCCCCGAAATAAACTGTTCATAAGAAAATCATATTCACTTTCCATGTAACCTTAAGAGAAATTTTTGTTATTGCTTAATTTATTTTAACAGTTTCTTTCTGTATTTCCATTTCTTCTTTTATCGCTTTTATTAATTTTTCTCTCACTTCTTCTTCTGAACCTTTCATTCTACATCCTGCCGCATCTCTATGACCACCACCACCACATTTTGCAGCTACCTTTTGAACATTTACATTTCCTTTTCCTCTAATAGAAATTCTCCAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTCTATCCCATATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 11 1275306-1274946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1275305 29 100.0 36 ............................. TGGTTTGAAAAAATAGAACCAAAGGGCTTAGTAGAA 1275240 29 100.0 37 ............................. TAAGACACAATCCTCTCCGTATATGGTAGGACAAGTA 1275174 29 100.0 36 ............................. TATACTCGTTTGTTTTCTCTATGTCTATTTCATTTT 1275109 29 100.0 40 ............................. ATTGCCCTATACTTCTTGTTAAATAATTCTCCTTCTTTAA 1275040 29 96.6 37 .......................T..... CTATCTATGGTCTTTAGTTCTGAAGCTCCTGACCACA 1274974 29 75.9 0 .....G.................TTTCTT | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 95.4 37 GTTTTATCTGAACTATATGGGATAGAAAG # Left flank : TCCATTTTTGAAACCTCCGGATAATTAATATAAATTTTAACATAATAAGATATACTATGGTTAGTAAACATTAACCACAGGAGGTAAGGATGCTAAAACTTGTGGCAATAATGGTTATTTTCTTGCTTCTTGTTGTTGCTAGTATAATAATTGGTATGAAAAAGTAATTAATATTTAAAAATTTATGATAAATTATTTGTTCAATAAATGGCTATATGGAAAAAGAATATGGTTTAATAAACATAAGTTGCTAAACTGCCTATGGTAAGAAATTAATAATAATTATTGTTAAATTTTGCATTTTGAATAGAAAATATATTTTTGTGTAAGTTGGCTTTTTATAAGCGCTAGCGAGAATATAATAGAAAATATATTTGCATTAATGGAGGTCTGATGCAACTTAATACCTCCAGCGAAGGTTTGAAAAAAATTTTTAAACCTTTGCTAACCCTTGAAATACACTTGCCAGATTAAATTTTTTTATTTAACCTAATTAACGG # Right flank : GTAAAGAGTTTTCAGGATTTTGTCTTAATTTTAGTAATTTCATAAGTTCTTGCCAGTCTGAACTCAAAATCTCAATAGCAGATATATTAACACTTTCTACCATATTCAATATATAATAATATTTCATAACTTTCTCAAAGGAGGAATTTGTTTAAAATGTTCAAAGTTCTGGTAACTGACCATTTATCCAGTAAAGGATTAGATATCCTCAATAATGACCCTGATATAGACCTTGATTATCAACCTGAAATCAGATGGGAAGAACTTCTGGAAATAATCAAAGATTATGATGCAATAATCACAAGAAGTAGAACCCCCGTAAATGAAGAACTCCTTGAAAGAGCAGAAAAACTGAAAGTTGTTGGTAGAGCAGGTGTCGGTGTAGATAATGTTGACCTTGATGCATGTTCAAAAAGAGGAATATTAGTAGTAAACACTCCTGGGGCAAACACTGTTGGAGCTGCTGAACTTACTATGGCTCACCTTTACGCTGTTCTTAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATATGGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 12 1287703-1287334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1287702 30 100.0 40 .............................. ATTAATTATGTCAGAAAACCAATTTATGAGGCTTATATGA 1287632 30 100.0 37 .............................. CAACCAAATCAAAAGATTTATGTTCTTCAACAGAAAG 1287565 30 100.0 37 .............................. TCAAAAATTCATCAACCCTGTCGGCTCTTAAGTTCCT 1287498 30 100.0 38 .............................. TCAAACTGTGTCTTTGTATATAAAACAGGTAGCCAGTA 1287430 30 100.0 37 .............................. AAGATGATAATATAAATACAATACTTGTTTATGCTTA 1287363 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 100.0 38 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : GTCTGGTTTTTCACGGACGGAGCAGGTATTGACCAGAATAACATCGGCTTCTTCCCAGTCTCTTGCTGGTTCATAACCTAAACTTTTTAGAATTCCTGCCATTTTTTGACTGTCATTTACGTTCATCTGACAGCCGAATGTTCTTATGTAATATTTTTTCAATTTTCCACCTCTTAAAATAGAATTTATACAGGTTATACAATTTATATTATTTTTTAATTTTCTTCAATTACTTAGGTTTTTGTCAATTTTTGAAAATTTGAGTCTGTCGATCACAGATTTTTGAGCTTTAATTGAGACAAAATCTCATAAAAAAATTGGCCAAAAATTAAATTCTGGCTTAGTGTATCAACAATTTGTCGATCCCCAAGGGTTTTTGCGGGATTAGAGGTCGACTGAAAATTATCTCAATTTGACAGCAATTCAAATTTTTCGTATATTTATTTCCAACAAGATATATCAATGGTTATTTGACAATAGAATATGAAATCAATTCAGGG # Right flank : TCTTGATAGCTGATATAGTCTTTCTGTATGTTTCTTAGTGTTCTTAGCGTGCCTATTACTTTCAAAAACTTGGTTAAATTTTGATATATTTCTGAATACTCAGTAAGGAACTTTCTATGTTTTTATAATATTTGCTTTATTCTTTTGTTCTTATGATTTTGTATCCAAAATCCAGTTCCAGAGTGCTATCTGGTTGGAGAGTAAACTCCCAGATAATTTTGCCATTTGCTTCTATTTTTTTCCATTTTTTTGAAGAAATTGGCTGGATTTCTTCTTCTTCTGTTCTCTGAACGGGAACTCTGTCAACGAGGACAATCTTCATAGCTTTTTTGTGCTTATTTTTTATTGTGTAATGCCATATCTTTGTGGTTACTATCTTTCCTAAAAATGCCTTTTCAATTTTATTTTCTTTTAGATATTTATTTACCTTTACAAAAACATCCTCACCTAAATAAAGTTTATTTTTTTCTCCTTCAGATAGAGGTTTTAATCTACCTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 13 1535689-1534791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 1535688 28 100.0 40 ............................ GTCAACAAAACAAACAACATTAGGAGCAGCACCGATGTCA 1535620 28 100.0 40 ............................ GTCAACAAAACAAACAACATTAGGAGCAGCACCGATGTCA 1535552 28 100.0 37 ............................ GTCAAAAATCAGCTTGTAGAAGCAGGTTTATTGAAGT 1535487 28 100.0 38 ............................ GACTGTCTCCCTTAATATAACATTAAATCTTATTCCTA 1535421 28 100.0 38 ............................ GAAAGGTTTTGGTTTTTAACATTAGATCCTCCTTAGAT 1535355 28 100.0 41 ............................ GTCATATTTTGCTTTTTCAATATCTTCTGGGATATAATTGT 1535286 28 100.0 40 ............................ GCTTGCAGGCACTATGACTTGCTCGCTTCAGGCTCGCTGG 1535218 28 100.0 36 ............................ GCCTTGTATATTATCATTGTTATCCTCAAATATAAC 1535154 28 100.0 40 ............................ GAAACATTGCACTGCTTACAAATGGCTTGCTTATGGAGCT 1535086 28 100.0 37 ............................ CGAGGAAGAAAAGCAAGCTCTTCTTTATGGGAATTGT 1535021 28 100.0 40 ............................ CAATATTGATTTTAATAATTTAAATAATTCTTCTTTATTT 1534953 28 96.4 39 ....C....................... CGATATGCTTCTGGTAGCTATACACCACCTCATTGCACA 1534886 28 92.9 39 ...............TA........... GGTGTCTTGGGGTCAGGTTGGGGAGAACTGTCATCTGAA 1534819 28 78.6 0 ............T..TA.AA.......T | G [1534795] ========== ====== ====== ====== ============================ ========================================= ================== 14 28 97.7 39 GTTTTATCTGAACTAAGTGGGATAGAAA # Left flank : GTAGGCGAAAATCCCGGCTCAAAACTAAGAAAAGCCCAACAACTTGGAGTCCCAACCATAGATGAACAACAATTCCTTGAAATGATAAAAGACCACATCCCTGAGGATTTAAGAGACAAAGTTAGTCTATAGACGAAAGTCTGGCTATTATAAATAAATGTTTGTTACATCAGATAAATTAGGTGTATAATTTGCTATATTTTTAATCTCAGGTTACATGGAAAGAGAATATGGCTATCTTATAAACAATCTATTTTGAGAAATATACTTAAAATAGTAATGATTATCAATAAACTTTGCATTTTGAATAAAAAATATATTTTTGTGTAAATTGGTTTTTTGCAAGGGTTAGCGAGAATATAATAGAAAATATATTTGCATTACTGGAGGTTTGATGCAACTTAATACCTCTAGCGAGGATTTGGAAAAATTTTTAAACCTCCGCTAATCCTTGAACCACACTTGCCAGATTAATTTTTTTTATTTAACCTAATTGGCGG # Right flank : TGCGTAAATTTTGGTGGCAATGTTTAAAGATGATTTAAGACGTTTACTGCGGGAATGTGTTCAAAATCTTTATCTGTAGTCGCAATGTATTTCAGGTTGTTCTCCTTCATTATAATAAAGATCAGGGCATCATTGCCTATCAATCCATATTCATCTATAACATTCTTTAATTTCCAGTAGTGTTTTTCTTTTATCTCGTAGATTTTAAAACTAAACTCTTTGAAAAAGTTTTTTACAATGTCTATTGTAGAACTGTATTTTTTTAAAATGTCTTTGTTATCTTTTAAATATTTGAAATTTTTCCCGCTCTGAATGATAATTAGTTTGAAAATAAGCTCATCTAATATCCGTGTAGTTATTACAAACTGGTATTTGTTTTCTTGTTCAAAAAGCTTTTTTATTTTTTCTTTGTGTTCAGTCTCTATGTCTGTTAAAAAGTAAATTAAAACGTTTGTATCGACCATTACTTTAACTTTCAAGTTCAAAAACCTCTGAGTCTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTAAGTGGGATAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 14 1862209-1861906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLL01000001.1 Persephonella sp. KM09-Lau-8 strain KM09_Lau8 BO11DRAFT_scf7180000000004_quiver_dupTrim_3231.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1862208 31 100.0 36 ............................... TATTATCCCTAAAAAATTCACAAAATCATTACGGGT 1862141 31 100.0 39 ............................... AGATTATTGTTGATATTTCTTGATTATATTAGTGGCATG 1862071 31 93.5 38 .............................AA GGTAAAAGTATAATTGGCACAAGGAGTGTTTAGTGAAA 1862002 31 100.0 36 ............................... GCTCTTCGTTTTTAAGATTGTAAAAACCGACAATTA 1861935 30 90.3 0 .........................T.-..A | ========== ====== ====== ====== =============================== ======================================= ================== 5 31 96.8 38 GTTTTATCTGAACTATATGGGATAGAAAGTT # Left flank : CCATTGATGATGTTCTGGTAATAAAAGGCATAAAAGTAATTGAGTCTAAACATGGTGGGCTGTTTATCTCATTTCCTAAAAAGGTTAGTTCAAAAGGAACTTATGTTGATATAGTTCAGTCCCTTGATAATGAGTTTACAGAGAAAGTCCGACGAGCAATCATAGACCGCTATAAAGAATTAATGAATATAAAGTAGTATAATAATTCTTGAGGTTACATGGAAAGTGAATACGGATTTCTTATAAACAGTCTATTTCGGGGGCTGGATTATATGATAATAGTTACTAATAAATTTTGCATTTTGAATAGAAAATATATTTTTGTGTAAGTTGGCTTTTTGCAAGGATTAGCGAGAATATAATAGAAAATATATTCGCATTAATGGAGGTCTGATGCAATTTTATACTTCCAGCGAAGATTTGAAAAAATTTCTGAACTTCCGCTAACCCTTGAACCACACTTGCCAGATTAATTTTTTTGACTTAACCTAATTAACGGG # Right flank : TTTAGAAGGACAAAAATCCTGTTTTTTCTAAGATTTCTATTCCGTCATAAGCTGTTAAATCCAGTTTTATAGGTGTTATAGAAACAAAACCTTCTTTGACAGCTGTATAATCCGTTCCTTTTTCGCATTCTTCTTCTAAACTCTCCTCCCCACCTATCCAGTAATAAACCTCTTTAGATGGAGAAATATATTTCTTAATTTCTTCCTTATAAGCTCCTCTACCCTGACGGGTCAACATAAAACCTCTTATCTGCTCCTCAGGTAAATTAGGAAAAGTCACATTCAAAAATACTTTTTCAGGTAATCCTTTTTTTAACACCTGTCTAACTACCTTCAAAGCCAATTTTGCCATTGTTTTAAAATCAGGATTTTTAGCCGAAGCTGGAGAAAAAGCCACAGATGGAATGCCAAGAAGCGTTCCTTCCCTTGCTGCTCCAACTGTCCCAGAATAAAAAATATCATTTCCCAGATTGGGTCCTGTATTTATTCCAGAAATCAGG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATATGGGATAGAAAGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //