Array 1 183803-185904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVA010000003.1 Erwinia amylovora strain Ea6-97 Ea_6-97_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183803 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183864 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183925 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 183986 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184047 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184108 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 184169 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 184230 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 184291 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 184352 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 184413 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 184474 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184535 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184596 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 184657 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184718 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184779 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184840 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184901 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184962 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 185023 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 185084 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 185145 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 185206 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 185267 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 185328 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 185389 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 185450 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185511 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185572 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185633 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185694 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185755 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185816 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185877 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196812-198795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVA010000003.1 Erwinia amylovora strain Ea6-97 Ea_6-97_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196812 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 196873 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 196934 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 196995 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 197056 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 197117 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 197178 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 197240 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 197301 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 197362 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 197423 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 197484 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 197545 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 197606 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 197667 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 197728 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 197789 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 197851 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 197912 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 197973 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 198034 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 198095 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 198156 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 198218 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 198279 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 198340 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 198401 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 198462 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 198523 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 198584 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 198645 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 198706 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 198767 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 208259-208587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVA010000003.1 Erwinia amylovora strain Ea6-97 Ea_6-97_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 208259 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 208319 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 208379 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 208439 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 208499 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 208560 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //