Array 1 321020-319466 **** Predicted by CRISPRDetect 2.4 *** >NZ_NREZ01000001.1 Pseudomonas aeruginosa strain SJU-S79_2 NODE_1_length_623671_cov_59.1362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 321019 29 100.0 32 ............................. CAGCTCATCGAGTACAGCAACGTGCTCAACAA 320958 29 100.0 32 ............................. TAGTCATAACGGTCATAGTGCTTAGACGACAC 320897 29 96.6 32 ............................A CCGACACCTACACCTCGACCAAGACCGGGGAA 320836 29 100.0 32 ............................. CGCTGCTCCTGCTCTGCCTGATCCAGGCCGCC 320775 29 96.6 32 ............................C GCAACGCCTCGTCGAGCGACGGCAGCGCGCTG 320714 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 320653 29 100.0 32 ............................. CCACTGGGTTACCCCGTATTGGTAGAGGGTTC 320592 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 320531 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 320470 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 320409 29 100.0 32 ............................. TGCCGGTGGCGGTGCCATGCCGGGTGCCGACG 320348 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 320287 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 320226 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 320165 29 100.0 32 ............................. CCATGAAGGGTTCCTTCCGCGCCGTAGAGCAG 320104 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 320043 29 100.0 32 ............................. CCCGCGCGGCAATAAGGTGAAACTGGGAGACG 319982 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 319921 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 319860 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 319799 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 319738 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 319677 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 319616 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 319555 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 319494 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 331501-330191 **** Predicted by CRISPRDetect 2.4 *** >NZ_NREZ01000001.1 Pseudomonas aeruginosa strain SJU-S79_2 NODE_1_length_623671_cov_59.1362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 331500 29 100.0 32 ............................. CAGCCGTGCATATCGCGCTGGATGTGCAGGGC 331439 29 100.0 32 ............................. CAACGCTTGGCGCGCTGCGAGGCGCTGGCGAA 331378 29 100.0 32 ............................. ACGATCCCGACCGCCAAGATTGGCCGTCGCCG 331317 29 100.0 32 ............................. GCTTGGATTCTTCTGCGTATGCGAAGCCGCAC 331256 29 100.0 32 ............................. ACGATGGCGTCCAGCAGGGTCGGCTCGATGTT 331195 29 100.0 32 ............................. AACGCGATATCGGACAGCGAACCGCCAGCGTG 331134 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 331073 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 331012 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 330951 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 330890 29 100.0 33 ............................. ACTGGTACCGCGCGGGCAATCAGCGAACCCGCG 330828 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 330767 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 330706 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 330645 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 330584 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 330523 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 330462 29 100.0 32 ............................. CTGCGTGTTCACGCCGAAACCCTTGGCTGGGT 330401 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 330340 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 330279 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 330218 28 79.3 0 A..........A..C.....-..A....T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGTCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGAAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //