Array 1 35-983 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBF01000064.1 Campylobacter fetus subsp. testudinum strain D6690 contig00066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 35 30 100.0 35 .............................. TCTTGGCTTCCATTCCAAAAGACCACATTAGCCAT 100 30 100.0 35 .............................. AGGCTTAATACAACTTTTAGCAATATTATTATAAA 165 30 100.0 35 .............................. TTTTTAAATCAATATTCTTATTTTTAATTTCGCTT 230 30 100.0 36 .............................. GCGGCATCTTTAATGGCTTTTTTATATGTGTCTAAA 296 30 100.0 36 .............................. GCAAATTCTCTAGAAATAGAAAATCTTTTTCTACTC 362 30 100.0 36 .............................. CTTTGAGCATTAGTAATACTCTTAGAAGTAGTAAGA 428 30 96.7 35 ...............G.............. GCTGTTTTCATCTTGTCTCCTTTTTTTCTTAAAAT 493 30 96.7 35 ...............G.............. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 558 30 96.7 36 ...............G.............. TCATAGAATGTGTTTTTATTGTACTTTCTAGCAGGT 624 30 96.7 35 ...............G.............. TAGCAAACGCACTTTTAAAGGCTGGAGACGCTATA 689 30 100.0 36 .............................. TAGTTAGATTTGCGTTCTATTTTATAGATAGTAACG 755 30 96.7 37 .........................T.... TTTTATATCTAAAATCATCGCTTAAATGACGTTTATC 822 30 96.7 36 ...............G.............. AGAGAAGTTTCGAAATCGACTTCTGTTTTAGCGTCG 888 30 100.0 36 .............................. CCTTGATTTTTGTATAGAGTTGGTTTTATGTCAATC 954 30 73.3 0 ..........C....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 96.9 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : GATGAAAATGGAGAGAGACTTTTAACAAAGGCGGG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAATGCTAAAAACATAAATGAGAAAAAGGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGTAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1591-510 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBF01000065.1 Campylobacter fetus subsp. testudinum strain D6690 contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1590 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCAAATAATAATTTT 1524 30 100.0 36 .............................. ATACTTGTTAGGAAATTTGACTACGCTAAAACAAGA 1458 30 100.0 35 .............................. AGTTAAAAAAATGAGAGTAAGCCGTTTTTTGTAAT 1393 30 100.0 35 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATAT 1328 30 100.0 36 .............................. AAAACTATTTTGAGTTATATTTTATGCCTATTTTAA 1262 30 100.0 36 .............................. AGAAATTTAGTATCGATATAATCGCACCTATACACG 1196 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 1130 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 1064 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 998 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 932 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 867 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 801 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 734 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 668 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 602 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 539 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAGCAAGGCTTAAAAATGTTCGCAGATGGT # Right flank : CATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBF01000090.1 Campylobacter fetus subsp. testudinum strain D6690 contig00093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 35 ............................... GTTTTTTAAAAATAGAGTTTTAAAGTGGATTGAAA 69 31 96.8 35 ..............................T TTTCCAAGTAGTGAAAGCTTTAGCATTTTTTTGGA 135 31 100.0 34 ............................... AGCCTAATTTAGGCTTTTATAAATGCTCTGACAT 200 31 100.0 34 ............................... GCAATGACTATTCTCCTAATGGTAAGTATCTTTC 265 31 100.0 34 ............................... GCAATGACTATTCTCCTAATGGTAAGTATCTTTC 330 31 100.0 36 ............................... AATTTTAAAGTAATGCCAACGGTAGACCTAGCCGAA 397 31 96.8 0 ..............................C | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 99.1 35 GTTTCAACACAAATATTGTCATTAGCAAACA # Left flank : AAG # Right flank : CTAGAGCCTTAAAGCTATCAAGAGCGTAGTTACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 4175-5715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBF01000047.1 Campylobacter fetus subsp. testudinum strain D6690 contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4175 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 4240 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 4305 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 4372 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 4438 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 4502 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 4567 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 4633 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 4698 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 4764 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 4830 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 4896 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 4962 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 5029 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 5095 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 5161 30 100.0 36 .............................. CGTTAAAACTTCAAAGACTTTCAACGAAATTTCCGT 5227 30 96.7 34 ..............C............... TTAAAGTAGGTGCGGAATGCACGTACGCTTCTTT 5291 30 93.3 35 A.............C............... TAGCCATTTCATTCTCGTTTATAGAAGGCTTAACG 5356 30 100.0 36 .............................. TATCAGCAGAAACTAGAGAGCTGTTAGTTCTTTATA 5422 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAGAGA 5488 30 100.0 36 .............................. ACTATCCCACGGACAAATTAGCCGCAATCTATGCTT 5554 30 100.0 36 .............................. ATCAACAAATTTAATAAATCGAGTTGTAAATATTTT 5620 30 100.0 36 .............................. AAAATTATTATTTGATGTTATAAATGTACCTGTAGT 5686 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.2 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CAAAAAAGAGAGCGACAAGATGTTTTACGAGGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 34-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBF01000100.1 Campylobacter fetus subsp. testudinum strain D6690 contig00105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 34 31 100.0 35 ............................... TGTTAAGTCCCAAAAATCCGGACTTTTAGTAATAC 100 31 100.0 35 ............................... CAAAATTCGCCGTATCTTTGGAGTTTGGCGGTTCT 166 31 96.8 36 ..............................A AATTTAGCAGGTTTTATAGGACATTGCGTTGTGGAA 233 31 100.0 35 ............................... TGATGAAAATGGCGAGAGACTTTTAACAAAGGCGG 299 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 99.4 36 GTTTGCTAATGACAATATTTGTGTTGAAACT # Left flank : GCAGACTGCTGTCGTCCAGCTCTGAAATTTTTCG # Right flank : T # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //