Array 1 488579-489339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMIP010000151.1 Escherichia coli strain MCE8 NODE_2_length_609632_cov_18.9091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 488579 29 96.6 32 ...........................T. GATGCCGGGCCACGCAGCAGCAGCGAACCGGA 488640 29 96.6 32 ...........................T. TGACCAAACTTGTGATGAGGAAAGACCAACGA 488701 29 93.1 32 ...........................TT TGCAGGGAGTAGATCAACAGTTATTAAAATCC 488762 29 96.6 32 ...........................T. ATTTTTTCCGTTAGTTGGTGAGCGTGATGACA 488823 29 100.0 32 ............................. CGTTTCGGCTGATTTGTTCGCCGCGTCGGTGC 488884 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 488945 29 100.0 32 ............................. TCTGACCAACTTCAGCCGCAGAACGGCCCCGC 489006 29 96.6 32 ............................T GAAATCGCGGGAGAGAGTTCGCGCATTATCAG 489067 29 100.0 32 ............................. CCGCGTTTCAATTGATGTAGAGACGGTTCTTG 489128 29 100.0 32 ............................. CTGGGGCAGGCGACAGGAACGCAGTCTGAACC 489189 29 93.1 32 .........G..C................ TAAGATGATCTCACGGAATTGAACGAACTACG 489250 29 93.1 32 .........G..C................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 489311 29 93.1 0 ....................A.......A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTAAACTAATCATTATCATTCTCTATAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTGGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGGTGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGAATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAAAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATATTTGTTAATTTTTTCTTTAGGGTAATAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 508924-509623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMIP010000151.1 Escherichia coli strain MCE8 NODE_2_length_609632_cov_18.9091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 508924 29 96.6 32 .....G....................... GGTGAGGCGTCATCTGACGCAAAATCTGGTGC 508985 29 100.0 32 ............................. GACAGACCAGTGGCGGCGGGGTAAATAAATGA 509046 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 509107 29 100.0 32 ............................. CCAGTGGATTGAGACCACTTATCAGATCACCG 509168 29 100.0 32 ............................. GTCTTAAACTCTTTCGGTTGGATTAGCTCTGC 509229 29 100.0 32 ............................. ATCTATTGGCGGAAATAGCGCCCGGTGCTGAG 509290 29 100.0 32 ............................. CCAATCAGGTCGTCGATTTTGCGCGGCTGCGT 509351 29 100.0 32 ............................. TACCGGTGGTAAGCAGCTTGAAATGGGCGACA 509412 29 100.0 32 ............................. AAAACTGTTGCTTTGTGATAAATATTCGCGGG 509473 29 100.0 32 ............................. TCGTTATTTACGGTCATGTCGTCACGTCGGGG 509534 29 100.0 32 ............................. ACTGCGGCGTCAGCCATGTCGGCGAGGACATC 509595 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACCTTGCCCCTGTTGATTTGCTGATCCAGCGAGCAGGGCGATTACAGCGACATATCCGCGATATTAATGGTCAGTTAAAGCGTGACGGTAAAGACGAGCGTCACCCTCCTGTATTGCTGATTCTGGCCCCCGTCTGGAACGACTCTCCGGGTGAAGAATGGTTTGGCAGTGCCATGCGTAACAGTGCATTTGTCTATCCCGATCATGGGCGAATCTGGTTGACGCAGCGTGTGCTGCGTGAACAAGGCGCGATTCAGATGCCACACTCAGCCCGGCTTCTGATTGAATCAGTCTACGGTGAGGACGTGGTAATGCCGGAAGGGTTTGCCCGCAGCGAGCAGGAGCAAGTGGGCAAATACTACTGCGATCGTTCAATGGCTAATAAGTTTGTGCTGAACTTCAGGCCCGGCTATGCCGCCAATATCAACGATTACCTTCCGGAAAAACTGTCGACACGTCTGGCTGAGGAGTCTGTTTCCTTGTGGTTGGCTACCTGTAT # Right flank : GTGCAGTACGCCTGATGACAAACCAAGCATCGGGAGTTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACTAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //