Array 1 23737-22548 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKL01000022.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 23736 29 100.0 34 ............................. TGGAAGACTATCTTAATAGTTTCATTGATACCTA 23673 29 100.0 35 ............................. TTACGTGAACAAATTACAGGAGTTAAAGGAGAATT 23609 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 23545 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 23481 29 100.0 37 ............................. AAAGTATTCAAAGTAGTTCTGGAACTCCGGGATATAA 23415 29 100.0 35 ............................. TGCAGAAAAGCTGTTCTTTAGTTTATTTATACACT 23351 29 100.0 37 ............................. TACAGGGGTTGACCGTTGTTGCACACCCGTTTGCTGA 23285 29 100.0 36 ............................. TAAGGTACGATTAATTCTTTGCAACGACACAAAGGT 23220 29 100.0 34 ............................. ATAGTTGTTCTTTTGTAAAATGTTTCATTATTGT 23157 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 23092 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 23027 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 22964 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 22901 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 22835 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 22770 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 22707 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 22643 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 22577 29 93.1 0 .........................G.C. | A [22553] ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.3 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACGTTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCATGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 864-1602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKL01000003.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 864 47 95.7 30 ...A......A.................................... TTTATTGGATGTGGAAAACATACAGGGGTT 941 47 100.0 30 ............................................... GCTTCAGGGCTTCCGTATCTCTAAAGAAAT 1018 47 100.0 30 ............................................... TAGCTCCTTGCAGGTTGGAAACACTTCCGC 1095 47 100.0 30 ............................................... TTCCCGGACGTATCGACGAACGAAAGAGAA 1172 47 100.0 29 ............................................... AATTAGCGAATAAATGCTGATGGCCAGTA 1248 47 100.0 30 ............................................... GCCTCTCGTTCCGGTAGCTTCATTCACAAG 1325 47 100.0 30 ............................................... TAAAATAGTCGGTTCTTATGGATGGGGATA 1402 47 100.0 30 ............................................... TAGCTTGAAGTTGCACCGGTTAACTGTGCA 1479 47 100.0 30 ............................................... ACTCCTATCGCATTAGCTGATCTTATGTAT 1556 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //