Array 1 455969-458375 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUVM01000002.1 Salmonella enterica strain CFSAN071990 CFSAN071990_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 455969 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 456030 29 100.0 32 ............................. CGGGTTTTGCGCGTGATGGGCGCCCATGAGGT 456091 29 100.0 32 ............................. CCTGTCGCAGCGCTTCGAGACGGCGCGCGTCA 456152 29 100.0 32 ............................. ATTAATTCAGTGGCTTAATTCTTCCCGGCGTA 456213 29 100.0 32 ............................. CTGAGTTGTGGCCGCATTTTCTTTGTCTTCCA 456274 29 100.0 32 ............................. AATTCGCCCGGATGTTCACTTACGGGCTGGGC 456335 29 100.0 32 ............................. TTGATCGGGATTCTGGCCGCACTGGGTGCCGC 456396 29 100.0 32 ............................. CGTTGTGCTGGGCTACAAATCCCCGCTGACAC 456457 29 100.0 32 ............................. GTTCTTCCTGCTTCGGCTGTTCGCTCATCAGC 456518 29 100.0 32 ............................. GGGCAGATTGCCAGGCGTGACGCGCTGGCCGA 456579 29 100.0 32 ............................. CGAGGGCGGGTTTCCAGTGGCTACCGTATATC 456640 29 100.0 32 ............................. ATTGGCGGGAAATGACGGGGGGCTACTACGCT 456701 29 100.0 32 ............................. TGCGGATTTACCGTCGGCTAAACCACGCTGAT 456762 29 100.0 32 ............................. GATGATGAAAAAAGTCCTGCAAAACACGTTTC 456823 29 100.0 32 ............................. GTGATATGGAATTTAACCTGCAAGACCAGTTT 456884 29 100.0 32 ............................. GGTACTTTTGATACCAATAAAGACAGAATTAC 456945 29 100.0 32 ............................. CCGGGGGCTTAACTTCAGGTGCAAGCACCATT 457006 29 96.6 32 ............................A CGGGGGGAAAAACCGCCAAAATATACGACAGC 457067 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 457128 29 100.0 32 ............................. GCGTTCGAGCGCAGCTTAACAGTCTGGGAACC 457189 29 100.0 32 ............................. GTGCGAAAACAATAAACGTGGTGGAATGGGTA 457250 29 100.0 32 ............................. TAAACAGACTGAGATTTTTCGGTTTCCGGATC 457311 29 100.0 32 ............................. GCGTTACGCAGCCCGGCAGCACAGTCAGCACA 457372 29 100.0 32 ............................. AGCGGCTACGATGACGACCTGCTGGCAGGCGA 457433 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 457494 29 100.0 32 ............................. GGGTAATTATGACGAGTCAGAGCATATTGCCC 457555 29 100.0 32 ............................. CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA 457616 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 457677 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 457738 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 457799 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTAAGGGTGCGAA 457860 29 100.0 32 ............................. CTTTTCCCAAAGAAGGCGCGCGCGGCGTTTTA 457921 29 100.0 32 ............................. TCTGGCAGATACTGAGTTTCCAGCTTGTTAAT 457982 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 458043 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 458104 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 458165 29 100.0 32 ............................. GGCCTGAACGGCGATCTGATTACGTGGAGTAA 458226 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 458287 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 458348 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTTCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 474545-477015 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUVM01000002.1 Salmonella enterica strain CFSAN071990 CFSAN071990_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 474545 29 100.0 32 ............................. CCGCATTACACGTATTTAATTTATTGCATGAG 474606 29 100.0 32 ............................. TTCGATATTGACATGAGCGCGTTAACTGGCCT 474667 29 100.0 32 ............................. CGATATGCAGTATTCTGCAAGATCTGGCGGCG 474728 29 100.0 32 ............................. TCCTCTAAAGACTGGCTAATCACGGTTAACGC 474789 29 100.0 32 ............................. TGCTGTACAGCACGCTCAATTAGCCTCGTGGT 474850 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 474911 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 474972 29 100.0 32 ............................. GCGAATGGTGCTTGCACCTGAAGTTAAGCCCC 475033 29 100.0 32 ............................. ACGATATATAAACGCTCTCTTCTGCCAGAGTT 475094 29 100.0 32 ............................. GAAACGCAGCGCGGCCTGACCTGGTACAACTA 475155 29 100.0 32 ............................. CGATAATCGCTCCTGTTTCAAATCGACGGGGC 475216 29 100.0 32 ............................. ATTCAGGCGACGAGGTCTGGCGCCGACTGGTC 475277 29 100.0 32 ............................. CAAATTAGAAATAAAAGATTTTCCACTGATCT 475338 29 100.0 32 ............................. CCGTGCCCCTGTGTGGGTTGTGCTACCGCGCC 475399 29 100.0 32 ............................. AGCGTTCAGGAACTTGAAATCGCGTTGCAGGC 475460 29 100.0 32 ............................. GATTTCAGGGTTATCCTGCAACCATTCCCTGA 475521 29 100.0 32 ............................. ACGGGGAGCCGCGTTTACACATCAAAGAGGCC 475582 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 475643 29 100.0 32 ............................. CGGCTGCTAATATCCGGCAGGCGCGCGCTATG 475704 29 100.0 32 ............................. AATCCCTCATTCCGTATCGCGCCAGCGTGTCG 475765 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAGTAAT 475826 29 100.0 32 ............................. CGTCGCGCTGATAATACACTGGTAAAAACGTT 475887 29 100.0 32 ............................. GTGTCGCGGCGCGGCAATTTGTTTCCTGACTG 475948 29 100.0 32 ............................. GCAATTTTGTGGCGAACGTGCTCGCTCTCATC 476009 29 100.0 32 ............................. CAGAACTGGTTTGTTTCGCGTGTAGTCCGCCC 476070 29 100.0 32 ............................. GGGTTATTGAGGTTTCCACGCGGAAAGTGAAC 476131 29 100.0 32 ............................. AAAATTATCGAGGATGATTTTAAAACCGGCGC 476192 29 100.0 32 ............................. GGATTGGGGGGACGTCAATATTAAACCCGATG 476253 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 476314 29 96.6 32 .......T..................... CCGGTACTCACCGCTGAGATTAAAACGCTGGC 476375 29 100.0 32 ............................. GCTTTGCTCTTTTGTAAATGACACATTGAAAT 476436 29 96.6 32 ............T................ ACCGCAGCGTTCGCCCGCAGGGTAAGGGGCCC 476497 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 476558 29 100.0 32 ............................. CCCGCCTGCATCGCGAAATCATTAATCGGGAC 476619 29 100.0 32 ............................. TTCATCATGACTATGGGCGAGGTTGGCGAACT 476680 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 476741 29 100.0 32 ............................. CGAGCGTAGCCGCGTGGTCCTCTCTCAAAACA 476802 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 476863 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 476924 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 476986 29 100.0 0 ............................. | A [477013] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //