Array 1 38858-39313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBX01000016.1 Streptomyces sp. NRRL S-378 contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38858 29 96.6 32 ..............T.............. CTCGCGCAGCACCAGGGAGGTAAGCGGTGAAG 38919 29 96.6 32 .A........................... CCGATGTACGCGCACCTGGTACCAGGACCCGC 38980 29 100.0 32 ............................. CCGAGGTGGTCTTGCGGGTCCGGGGCGGCACA 39041 29 100.0 32 ............................. GGAGTCGCCCTGTCCGAGCGCTACGCCTGGCA 39102 29 100.0 32 ............................. CCCGGGGCTGACCTGCAAGATCACGAACCCCC 39163 29 96.6 32 .....A....................... AGCAGCAGCGGGGGCCGTCTCCGGCGAGGGTG 39224 29 100.0 32 ............................. TTCCGGGGTCGTCACGCCCGCGACGGCCGCGA 39285 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GGGACCACCCCTGCGTGCGGGGGCACCGG # Left flank : CGGCCAGAGCCAGCACCGAGTTGTAGGGGATGGCGCCACCGACGATCTCCGATTCGAAGACGTCGGGTAGGACCTCGGGGAAGAGGACCTCACCCCAATCGACGCTCGCCGCCGGCTTGGTCGCGCACTCCGCCAGCAGAGCACCCAAGAGGAAAGGCGGACGATCCACCGGCCTGGAAGCGGCCTCCAGCTGCCGAGCGGCGCTGTACCGCAGCCCGGTCGCTTCCTGAACCGCGCGCGCTGCCCGCTTGCGCTTCTTGTCCTGCGTCACGATCTTCCTCACCCGGCACGCCCACGCCCATGCCGCAGCAAGGTCACAAACTGCTCTGTTGTACTGCACGCGAGTCCGTGACCCTTGTCCGCAGCCGGTGCGTGGGGCGGTCCGGCCGGGTGCTGGCAGGCGTGGGCTGCCGCGCAGAGCGTAGCGGATCAACAGGTTCCGGAACGTGAAGGCGTGCGGGGCACCTGCCGGACCGCACCCGTCAATGGGGGCTCCGCTG # Right flank : GGCTTGTTGACCTGGTGTTTTGCCCAGTGGTGTCGTGGTTGTGGTCAGGTTCCAGCGATTCCGGCATTCGGCGCACTGTGCACTTGTAGGGGTGGCTGAGGGCTTTCCCCTCAGATTGGCCCTGGTGGGGGCCTTCCCGCTTCGTTCTGCCGGGTGGGCGGCGTGGTGCTGCCCGGTGTGGCAGTCCACGGGCGTTACAGCCCCTCTTCCAGGGGACTGGTCCAGGTCACTGGACGGGTACGGCGTGTTTCTTGATGTTGCGGGCCGCGTTGGTGTCGCGGTCGAGGATCATTGTGCAGCTTTCGCAGTGGAATGTGCGGTCTTTGAGGGTTTGTGTCGTGTTGGTCCATCCGCAGGTCGAGCAGGTGCGGGAGGAGGGGAAGAAGGTGGGGACGCGGGCGACCTGGACGCCGTGCCAGCGGGCCTTGTACTCGATCTGCCGGTTGAGTTCGCGGAAGGAGGCGTCGAGGATTGCGCGGTTGAGGCCGGCCTTCGCGCGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACCACCCCTGCGTGCGGGGGCACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 3164-3541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBX01000094.1 Streptomyces sp. NRRL S-378 contig94.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 3164 29 93.1 32 ..............T....A......... CCGATCGAGAAACAGAGGATGATCACCGGCTT 3225 29 100.0 33 ............................. TGCGCTGGCACCCGGCGGGTAACGACGAGTCCG CC [3230] 3289 28 93.1 77 .................-...C....... CGCCAAGGCCGAACTCCTCCACCGCGAGGCCACTACTCTGGTCCCGTCCTGTCGAAGTCGACGGTGTACTCACCGGT 3394 29 96.6 32 .............G............... GACGGCGCGGCGCTGGCGTCGTGGACGGCCCG 3455 29 89.7 29 .................A......CG... GCCCGCCAGCCCGGGGGCCGGCCTCAGGT 3513 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ============================================================================= ================== 6 29 94.8 41 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCTCCGAGGGACTGGCGTCGATCAGACCGATGGCAAGAGCACGGCTGATGGCCAACCGGTTGGAGCCCCACCGGTCCCTCGCCCCGGTAGGCGCGCTACTGGAGCGCGCGAAGGGTTAGCGGGTGGCTCGGGTGATCCAGTCCAGGTACTCAGCGCGGCCGGCGTCGATCGTGAACGCGATGACCTCAGGCGAGTCATAGGGGTGGTTGTCCACCAGATGCTTCTCCAGTGCCTCGCGCCGGTCACCGGTCGTACGGAACGTCACCTGATACTCGGTGCCCTCGCAGACCTCCCCGAGATGGCGGTACGTCGTTTCAATCGGCCCGGTCACCTGCCCGGAAGCGGCTAGGCTCGCCTCCACCGCCGAGCGAGACAACTTCCGCGCAGCATCCTGATTGTCCACGGTCGTGATTACGATCAAGAAGTCAGCCATAGGGGCAACGTACCCACCCAACCAGTCGCGCTCATACAGGATGCAGTGGGTTCGGGAGCAACTGCAT # Right flank : CGTGGCCACGCACCTGAAGGCGGAGCAGGAACGGCGGTCAGGTGTGGCAGTGACAGGCGCGGGCGCCCGGGGTGCGTCGCGTCCAGGGTCCTTTCCCAGCGGTCGAGAACCGCGGGGTCGTCCAGGGCGGCCAACTGTGCGCGGCCACTGGACGCGGAACACTGGCAAGGCTCGGCGTAGAGAGTCGCTGGCACCACCCATCCCCCTGTGTGACGCCGTGACCCTCTGGGGGGGCCTGATGGTCGTCGTGTCTGACTCCGCACTCAAGCGCGCTCGCCTGAGCAGGAACCTCACCTTGGAGGAGGCGGCCGACCTCCTCAACGAAATCACCGGCGGCGCCACCGACGCCTCGCTGATGAGCGGCTGGGAGTCCGGCCGCAAGCGGACCGGGGCGAGGAACCGGCGGGGCCTGTGCCAGCTGTACGGCGAGCCGTCCGAGGTGCTGTTCGCCCACCAGGACGGGCAGAACCCGGCAAGCCTGCTGGAGGCCAGCGGCACGG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:-0.72, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //