Array 1 1114-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFA01000020.1 Streptococcus mutans strain PKUSS-1 C181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1113 28 100.0 33 ............................ TAACCTGTCGCTAGAAGTCTTGTCAGAAGTTAA 1052 28 100.0 33 ............................ TAGTCTTTATCTAGTCCACAAGCTAAAACTTTA 991 28 100.0 33 ............................ TGCAAAAGTCAAAAATCAAAATCAAAAGCAAGC 930 28 100.0 33 ............................ TAGAAATCAAGCGTGAATTGACAGCGCCTGTAA 869 28 100.0 33 ............................ TACGGTTTAGTAGACTGTCAGTAGTTTTTTGAA 808 28 100.0 33 ............................ TAAATTAATCAACAAAGTAAACGTTAACGGTCA 747 28 100.0 33 ............................ TAAGAGCCGCCGCCTGAATTTAAAATCAGCACA 686 28 100.0 33 ............................ TGCAGTTGACGCTCCACTTGCCAAAAACAAATA 625 28 100.0 33 ............................ TATGAGCGCAAGCTTTGACGAAGCTAAGAACTA 564 28 100.0 33 ............................ TATTAGTACTAGACGAAGTGGTGAAACGAATAC 503 28 100.0 33 ............................ CGCGCCTTACGTGTTAAATGTAAGCACTGACAG 442 28 100.0 33 ............................ TGCAGTCATGACTTTTCCTGCGGTATCAGCCAA 381 28 100.0 33 ............................ TACGGTTTAGTAGGCTGTCAGTAGTTTTCTGAA 320 28 100.0 33 ............................ CCACAATTTTATGAACCCGCAAAACTTAAAGAA 259 28 100.0 34 ............................ TGAAAGCTGTTCTTGAAACTGAGTTAGAAAACGA 197 28 100.0 33 ............................ TAAAAATGAGAAAAAAGAAAAAATATTCTGTAA 136 28 100.0 33 ............................ TACGAGCAGGAACTCAAAGAGCGATATGAAAGA 75 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CGACTTTACCTTTTTCACATTGCCAATCTAGCCAATTTTACCCGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35514-35364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFA01000017.1 Streptococcus mutans strain PKUSS-1 C187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35513 28 100.0 33 ............................ TACGGCATGCAATGCGTAGATATAGATACAGAC 35452 28 100.0 33 ............................ ACATTCTTAGCATAAAAAGAGCCAAGAATAGCA 35391 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GCGGGGGTGATCCGACTTTACCTTTTTCACATTGCCAATCTAGCC # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57031-57264 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFA01000012.1 Streptococcus mutans strain PKUSS-1 C197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57031 36 86.1 30 T...A.TT.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA C [57037] 57098 36 100.0 30 .................................... CGTTCAAAACTTCTGCCCCAGCTGGCAAGA 57164 36 100.0 29 .................................... AGCATTCAAAGCATTTTTAAGTGCACTTA 57229 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGGTTTTGGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTTA # Right flank : CAATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAACCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //