Array 1 276-966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFTR010000022.1 Clostridium chauvoei strain BS92-02 contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 276 30 100.0 36 .............................. TAATTGAAACTAGTATCACTGATTCTTTTTTTTCTT 342 30 100.0 36 .............................. AAAGGATTTCTTGTTCCGTATTTTTTAGATAAATTA 408 30 100.0 37 .............................. GGCACTTGGTAAAATATACCTTTTGCTTAAACTCTGC 475 30 100.0 35 .............................. TAAAATACCACTCTTCTATTAATCTTTGGCTTGTA 540 30 100.0 37 .............................. ATCTGCTTAGGATAGTCTTGTGTTTCTTCAAAGCTAG 607 30 100.0 36 .............................. ATTGATGGAATGGTTAATTGATTATAAGAGATTGAA 673 30 100.0 35 .............................. CTTATCCATCTGCCCATACCAGTTATACCATTCCA 738 30 96.7 36 .......................G...... ACATATTTAACTTTCAAAAGCAACTGATTGCAATTC 804 30 100.0 37 .............................. ATGGTAGGCAATATATTTGTTGGAACTTATACTAAAG 871 30 100.0 36 .............................. GATTTATAGTTTTGACTATGATGATGAGTATATATA 937 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.7 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : CTACGCTAGCGGAGCTATCAATAATATTTGAAGATCAATTAAAAGATGAATTAGCTTAAAAGCTTGTACTTTTTATAAATTATATGCATACTATTAGATTTTTTTGAAATACTAAAAAAGGTAATAAAAAACATTATTAGTATTTCTTAAATATAAAAAAATATTACTGGAAATGAAAATTTCCAGTAATATTAAAATAATAAAAATGATAATTACACAGAATTATCTATTCTCTCAAATATCCTAACAATTAAGTATTATCTCTTATTCCCCTTG # Right flank : TACAAGGCAATTTGAGTACTTGAGTATACCCAATTTGATAGACACATAGAAAGTACGTATAATAATAATTAAGAAGGATGTGTTTATTAAATGGGAAACCAAAGAAGATTTACTAAAGAATATAAAGAAGAAATAATTAGGCTAGTAACAGAACAAGGTAAAAAGGTTTATGTTGGTGATATTACCTATATAAGTACTGAAGAAGGCTAGTTGTATTTAGCTACTGTAATTGACTTATTTGATAGACGTATTACAGGTTGGGCAATGGATTCTACTATGACTAGAAGACTAGTTATAGATGCCTTTAATACAGCTGTATTAAAGGATGTTGTTATGATAATGCTTGTGCAGAATTATTCTTCTTATCTTTAAAGAAGCACTTTCTTTATGGAAGAAAATTTAAAACGAGAGCGGAATCAAAACAAGCTATAGTTGAATATATTGAATTATTTTATAATGCAAAAAGATTACACTCTACCTTAGGGTATAAGTCACCAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 13043-15240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFTR010000042.1 Clostridium chauvoei strain BS92-02 contig00042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13043 30 100.0 35 .............................. AGATAACAACTGGAGAATAAAACCTATAGAAGAAG 13108 30 100.0 37 .............................. AAATTGTGTTCCGCCGGGTGCAAAATTCCCTTATATA 13175 30 100.0 37 .............................. CAGGAGTCGTTGTATTTGATGAAATACATGAATATGA 13242 30 100.0 36 .............................. AAAGGAGAAATATATAGAGTTGATAAAAAAATATTT 13308 30 100.0 36 .............................. ATTCTCCTAAAGATGATAAGAATGAATCTTTTAATG 13374 30 100.0 36 .............................. AGATAAGCTAGGTAGTGACCCTGCTGGAAAATTACA 13440 30 100.0 36 .............................. GCTGAATCTGGTGAGGACAATGTTGATATAACAATT 13506 30 100.0 36 .............................. TTTGTGCAATACTATAGATATAGCAAGTGCAAGTTC 13572 30 100.0 36 .............................. CATCTGACACTAATAAAATAGAACTAGAGATTTACA 13638 30 100.0 34 .............................. CCTTCTGATGATATAACATTTGCTATAAGTTGTG 13702 30 100.0 36 .............................. GTTAAAAATTTTCACCCACAAGGAACTTTTATACAA 13768 30 100.0 35 .............................. AGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAG 13833 30 100.0 35 .............................. AAGTCAGTTTATGTGTGGATTAATCCAAAAGCATT 13898 30 100.0 36 .............................. TGGACTTTCCTCCCAAGCTTATTATTTTTTAAAACA 13964 30 100.0 36 .............................. TTGTTAGCTTTCTGTATTTGCAAATCGCATATAATT 14030 30 100.0 35 .............................. AAATTTGGAGGGATAATTTAAATGGGTATATTAAA 14095 30 100.0 36 .............................. CTTTTAACATATCCCAATCCTTGATAACGAGAATAC 14161 30 100.0 35 .............................. GATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTT 14226 30 100.0 36 .............................. TAGATTGAATGAGCATAAAAGCTTTTACTGTTTAAC 14292 30 100.0 35 .............................. GTACAAGTGCAAGAATAAAGAATAGTGGAAAGGAA 14357 30 100.0 36 .............................. TATATTATTTCAGCTAAATCTAACATTCCCGTATCA 14423 30 100.0 37 .............................. GTAAGTAGGAGGATAAAGAGAGCTATAAAACATTTAA 14490 30 100.0 35 .............................. ACAACTTACGAACTAGCTAACAAAATAAGCGGGGT 14555 30 100.0 36 .............................. TTAAAGTTTCGGTTAGCTACGTCCATATTTTCCCTG 14621 30 100.0 36 .............................. TTTGAAAGAGGTGTATTAATATGCCTATTTTTTTAT 14687 30 100.0 35 .............................. GAGCAAGAAGAATATAGTACATCAAAAAATAATGA 14752 30 100.0 36 .............................. TACTTAGGGTTTTCCTCATAACACCCGATATGGTAT 14818 30 100.0 35 .............................. ATTCTTTGCTTTTATCTCTATATTTAACTATCTCT 14883 30 100.0 36 .............................. CAGAAAGGCTAGGAATTCTAATAAAGAGTACGATGA 14949 30 100.0 36 .............................. ATTGTAAATCAAGTGAGACCTTTCCCAACACCGGCT 15015 30 100.0 34 .............................. AAAAGGAGCTGATGGGAATCAAGGACCAATTGGA 15079 30 100.0 36 .............................. TAAGGAAATGTACAACAGTATAATTGGTAAAATGAA 15145 30 100.0 36 .............................. GGTAGAAAATAATGATGAAATAAAATATTGTTTTTA 15211 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 100.0 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : ATAAAACCTTTTTACCATTTAACTTAAAGGATGGGATGTAAATTGAAAAAACAAATTAATTATAATTACGTATTTATATTTTATGATATAAAGGAAGAACGTGTAAATAAAGTATTTAAAGTATGTAAAAAATATTTATCACATTTTCAAAAATCAGTATTCAGAGGAGGAATAACTCCTTCAAAATTAATTTTATTGAAAAAAGATTTAAATAAAGTTATAGAAAAAGAAGAAGATTTTATATGTATTATTAAACTTTTAAATGGGGATGTTTTTGGAGAGGAAATAATAGGAGTTCAAGGGCAAACAACAGGAGAAAGTTTAATAATATAAAATTACCAACCTAATAATATAGGTTAGAGCTTTAAAATACTACGGTATAAGTTATTTTTGTATTTAACTTTTATTTATAATAAAAAGCTGGTAATATATTTATATAAACATTATAAAATGGGCGTTGCATAGATATATAGTTATAAAAGAACTCTCATTTTTCTAAG # Right flank : ATCCGAGACAGTAGATAGTTTTGTGTAAAAACAAAACTATCTACTGTTTTTTGTATTAACAGTTGGAAGTTTTGGAATAATATACTATATAAATTAGGAGAAATTATTCTGACAAGAAAAATTGATACCAACTTTGATTACAATGAGGAAATTAAAAGATGCAAAACAATCGATGATGTAATGGGTAAAAACGGATTAATACAAAGATTAGTTAAAGATGTTCTTGAAAATATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //