Array 1 51978-54812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHSV010000013.1 Salmonella enterica subsp. enterica serovar Rissen strain BCMOA-C1/C4-TMB-07 NODE_13_length_181226_cov_21.375304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51978 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 52039 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 52100 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 52161 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 52222 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 52283 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 52344 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 52405 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 52466 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 52527 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 52588 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 52649 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 52710 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 52771 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 52832 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 52893 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 52954 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 53015 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 53076 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 53137 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 53198 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 53259 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 53320 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 53381 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 53442 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 53503 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 53564 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 53625 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 53686 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 53747 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 53808 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 53870 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 53931 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 53992 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 54053 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 54114 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 54175 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 54236 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 54297 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 54358 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 54419 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 54480 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 54541 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 54602 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 54663 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 54724 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 54785 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71424-73344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHSV010000013.1 Salmonella enterica subsp. enterica serovar Rissen strain BCMOA-C1/C4-TMB-07 NODE_13_length_181226_cov_21.375304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71424 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 71485 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 71546 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 71607 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 71668 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 71729 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 71790 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 71851 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 71912 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 71973 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 72034 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 72095 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 72156 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 72217 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 72278 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 72339 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 72400 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 72461 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 72522 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 72583 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 72644 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 72705 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 72766 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 72827 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 72888 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 72949 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 73010 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 73071 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 73132 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 73193 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 73254 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 73315 29 93.1 0 A...........T................ | A [73341] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //