Array 1 5211-376 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJL01000648.1 Xanthomonas oryzae pv. oryzae strain GX09 scaffold647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5210 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 5145 31 100.0 35 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCG 5079 31 100.0 34 ............................... AGGCGCAGGGGGATGTTGGTACGGCGCCAAGTTG 5014 31 100.0 34 ............................... TGCACCCGTACCGAAAGTTTGCAGGGGTGCGGTG 4949 31 100.0 35 ............................... CTGCGGCCCGGGTACGACTCAGTTGCAATGCATAT 4883 31 100.0 37 ............................... GCGCCCGTGGTCAAGCTTACGGAGACCATCATCTCCG 4815 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 4750 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 4684 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 4618 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 4552 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 4486 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 4419 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 4353 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 4287 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 4222 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 4157 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 4091 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 4025 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 3960 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 3896 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 3830 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 3765 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 3698 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 3633 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 3565 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 3499 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 3435 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 3370 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 3303 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 3237 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 3171 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 3103 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 3037 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 2972 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 2907 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 2841 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 2775 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 2710 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 2644 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 2578 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 2513 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 2447 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 2381 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 2314 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 2248 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 2183 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 2117 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 2050 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 1983 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 1919 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 1854 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 1788 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 1723 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 1656 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 1590 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 1523 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 1457 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 1393 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 1328 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 1263 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 1196 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 1130 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 1064 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 997 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 933 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 867 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 802 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 736 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 671 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 604 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 539 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 472 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 406 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 74 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //