Array 1 169778-170538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOGI010000005.1 Escherichia coli strain ARS-CC11314 NODE_5_length_254513_cov_25.552862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169778 29 96.6 32 ............................T GTATTCCAACGAAGATATTTTCGACGGGTATT 169839 29 100.0 32 ............................. GGCGCTTCGGTGTCGATCTGGGCGTTGATGGC 169900 29 100.0 32 ............................. ATGTCGGCTGCAATCTGCCGCGCCGGGCGTGT 169961 29 100.0 32 ............................. GCTGGATACAGTCTGGCAGGGTTCTGTGATGA 170022 29 100.0 32 ............................. ATGATGCAGCCGTCTCAGGACGACCTTCGCAC 170083 29 100.0 32 ............................. AACGGCTACGGCACTGAGGTGACAAACCAGAT 170144 29 100.0 32 ............................. GAAGCGACCCTTGCGGCGGCGAACCGTAAAAA 170205 29 100.0 32 ............................. ATTCGGATAAGTGTCTTAAGGTCGTTGCTGAT 170266 29 100.0 32 ............................. GGCGAATGTTCGGTCCCGGAACTAAACCGGCA 170327 29 100.0 32 ............................. GTTTCTGGCATCGGAAAACATTGCATATCGTC 170388 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 170449 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 170510 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAGCTTGTAAAGAATTCCACTCATTTGTATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATTGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATATTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATGCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196238-197610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOGI010000005.1 Escherichia coli strain ARS-CC11314 NODE_5_length_254513_cov_25.552862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 196238 29 100.0 32 ............................. CAGTGGCGCGCCAGCGCCTGCTGGATGCCCTC 196299 29 100.0 32 ............................. AAATTGAAGAAAGCTGCCCCATCAGATTGCAA 196360 29 100.0 32 ............................. TTGCGTGACGGTGACGGCACCCTGCTGTATGA 196421 29 100.0 32 ............................. CCAGCGAGAGCATTAAGCGCCTTCAGCACTTT 196482 29 100.0 32 ............................. AGGTTAAAGACGTGATGCCGGACGGCACTGGA 196543 29 100.0 32 ............................. GCAATGAGTAAATATACATATTTAAACGATTT 196604 29 100.0 34 ............................. ATAATGCGCGTGTTTTTCTACCAGAACGCTGTAC 196667 29 100.0 32 ............................. TATATTTTGAGGGTGACACGATATGAGCGTTG 196728 29 100.0 32 ............................. CTGATTTAATTTTTCCGCGTCTGATATCTATA 196789 29 100.0 32 ............................. CTCCGATCCGCACGCCCGGTAAACGAGGTTGT 196850 29 100.0 32 ............................. GCACTGGATTGACTGATATTTATTTAGACCCT 196911 29 100.0 32 ............................. TCACCGGTTAACAGTAGTTCGTGGTCTGTATT 196972 29 100.0 32 ............................. CGCGGCATACCAGCGGGTTGTAATTGACTCGC 197033 29 100.0 32 ............................. AATAAATATCAAAAATTACGCGCGGCGGCAGA 197094 29 100.0 32 ............................. CTCTTTTCTGCCTCATACGACGCACGGGAAAC 197155 29 100.0 32 ............................. GTTTAATTTCAACTAACTGATATTTATTAAAA 197216 29 96.6 32 ............T................ GCCCAATCGGACGATGACAGCGAATATACAAC 197277 29 100.0 32 ............................. CTTTGTTGGAATATTTAGCTGTCGCAAGATAG 197338 29 96.6 32 ................T............ AAAATTTACAGGGAAAAATGGTCGCGCTGGAT 197399 29 100.0 32 ............................. CCTGGCGCTGACCGTGAATCTGATGATGAATT 197460 29 100.0 32 ............................. TGGATTGCGGAGGATGACGGCGTTCTGAATCC 197521 29 100.0 32 ............................. AAACTGAACTTCCAGGCGACCGACAAAAATAT 197582 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //