Array 1 1-1249 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPR01000011.1 Salmonella enterica strain BCW_4855 NODE_11_length_180030_cov_3.03135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 93.1 32 -.........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 61 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 122 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 244 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 306 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 367 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACC 428 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 489 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 550 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 611 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 672 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 734 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 795 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 856 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 917 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 978 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1039 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1100 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1161 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1222 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17382-18186 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPR01000011.1 Salmonella enterica strain BCW_4855 NODE_11_length_180030_cov_3.03135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17382 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17443 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 17504 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17565 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17626 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17688 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17791 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17852 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17913 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17974 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18035 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18096 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18157 29 96.6 0 A............................ | A [18183] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 88351-89474 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPR01000018.1 Salmonella enterica strain BCW_4855 NODE_18_length_89474_cov_2.95447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88351 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88412 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88473 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88534 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 88595 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 88656 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 88717 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88778 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88839 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88900 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88961 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 89022 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 89083 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 89144 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 89205 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89266 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89327 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89388 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89449 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //