Array 1 89664-93019 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSWD01000005.1 Bifidobacterium pseudocatenulatum strain OF05-12 OF05-12.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 89664 33 100.0 34 ................................. TTCCCGTGCCTGTATGGGTCAACGCTTGCGCAAG 89731 33 100.0 34 ................................. CTCCTACACGGTGCATGATGGTGATAAGATCACC 89798 33 100.0 32 ................................. TTTGGCGCGATGGCACCGCGGCAACTATCCCA 89863 33 100.0 36 ................................. TGGGGTTGTGACGGAGCGTGACTTGGCTCAGGCTCG 89932 33 100.0 35 ................................. ACGAGCGGCAACGGTCTGACTTTCTACGGCGACCA 90000 33 100.0 32 ................................. AGCGCACCAACCTTGATGCCACCGACCCACGT 90065 33 100.0 34 ................................. ACGTCCGCATCGCATCGAATCTTGAGACTGTCCG 90132 33 100.0 35 ................................. ATCTCCTCAGGCACCTACATCATCGAAATGGTGCT 90200 33 100.0 34 ................................. GGATACGGAAACCCATATGCCGAAACGAGCGTAA 90267 33 100.0 35 ................................. AAGCTGGGTGAGTATCTGGTCGATCATGCGCATTG 90335 33 100.0 34 ................................. ACGATCCGCTTCGTCACAACGGCGGTGACGTTGA 90402 33 100.0 33 ................................. TGTCGGGGCGTTTTGTTTTATCGAACGCATGGA 90468 33 100.0 35 ................................. CGCCAAGGACTTTGGCGAGCTGGCCTTCATCCAGT 90536 33 100.0 32 ................................. ACCGGCATCGCGATGGTGTCGGCGCCGGCACG 90601 33 100.0 34 ................................. AACGCATTGTACTGCGTGGACGGGAACTGCATAC 90668 33 100.0 33 ................................. ATTTCGTAACGTGTATGAATTGCGGTATAATAT 90734 33 100.0 33 ................................. AACATAATCGAAAATACACGTCTTACCGTCAAG 90800 33 100.0 35 ................................. GGACGTACGCCGGTAAAACCGTACATCGTCCGCAT 90868 33 100.0 36 ................................. AGTGATTTTAATGATTTGATGACTAAGAATAATGTG 90937 33 100.0 35 ................................. ATTGGCGCGCTGATACAATTCGTCACGCATGGCAG 91005 33 100.0 35 ................................. ATAGACAACGTGCGCGGGTACGTCGGGAATGCCGT 91073 33 100.0 32 ................................. GGCTAATCTATTAGATCAATACAATTCGTCAA 91138 33 100.0 34 ................................. GAACTGTGACACTACCCACCCGGCGTGATGGCGA 91205 33 100.0 33 ................................. TACATCCGCACCAACGGTGGCGAAATGCGCCGA 91271 33 100.0 34 ................................. GACTGCTGGTATGCGGGCAATGCCGGCAAGCTTG 91338 33 100.0 35 ................................. AACGACGTTGCGCGGAACATTTCACTAGGTTTCAC 91406 33 100.0 33 ................................. GTGATGTTGACTGACGACATGCGTGAAGAGCTG 91472 33 100.0 35 ................................. GACTTGCGCTCACATAAGACGATTTAGACCCTCCG 91540 33 100.0 34 ................................. AAGACATACTGCAACCGGTGGCCGGACGGCACCG 91607 33 100.0 33 ................................. CGAACAAGGGTGTATGCAGTGCTGAAAGGCATG 91673 33 100.0 34 ................................. GCCGAGTATGCTCGAAAGGGCGGTTTTTATCGAG 91740 33 100.0 35 ................................. AGCGTTTGATCGGCTTGTACATCCAGCATGCCGAT 91808 33 100.0 36 ................................. ACCCCACTGTACAGGCTTACGGCGGCAGTACGCAAT 91877 33 100.0 35 ................................. ACCTATTGGCAGACCACCGACATATGGACGATATG 91945 33 100.0 34 ................................. GATGGCTCCCGTCTTCCAGCCGCCGAGCCAAGAG 92012 33 100.0 32 ................................. TTCTTCTGCTGGGACGAAATGCTCGAAACCTC 92077 33 100.0 35 ................................. TCGCACCTATTATTATTTGAGGAGGACTTTATGAG 92145 33 100.0 34 ................................. ACCGCCGTGTGCTTGCCGGTGTATTCGCCATGCT 92212 33 100.0 34 ................................. ACCTTCGGGGTGGAGATTGAAATGGAATCCGAAA 92279 33 100.0 34 ................................. GTGCGATTAGGTGGGTGTAGTCGGAGATGATTAC 92346 33 100.0 35 ................................. TTCCGGACATGTCGAGCTGCGCACGTACAATTCAT 92414 33 100.0 33 ................................. TGTCCGGCGATGGCACCGATCCGAATCTCAATG 92480 33 100.0 35 ................................. AATCTTGCTAATGGGTTGATTGGCGTCATGGTGCG 92548 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 92613 33 100.0 8 ................................. CNNNNNNN Deletion [92654] 92654 33 90.9 34 NNN.............................. CGCGCCATCAACACGGAATACTCGCCGAGCACCA 92721 33 100.0 35 ................................. ACCCAGCCGGGCGCAGTGCATCGCGGCGAGGTCGA 92789 33 100.0 32 ................................. ATTGCGGCGAACGTTCTGCACGCTCTCCCGTG 92854 33 100.0 33 ................................. GGGGAATAATGGTTACATTATTGTTGCTTGGTG 92920 33 100.0 34 ................................. ATCGACGAATGGGGGGAACTGAAGCAGAAGGCGA 92987 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 51 33 99.8 33 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAACGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //