Array 1 59569-61870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMON010000011.1 Megasphaera elsdenii isolate MGYG-HGUT-02547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59569 28 100.0 32 ............................ ACGTGCGAGGGGGGTGTAAAACCTACGAAAAC 59629 28 100.0 32 ............................ TAAATTTTTATAGCCAGCACTCGAGGTGTTTG 59689 28 100.0 32 ............................ AAGTGGCTATAGTTTTACGTAAAAATGCCGAT 59749 28 100.0 32 ............................ GCTTTTTCCTTGTCCGCTTTCAGTAGCGATTC 59809 28 100.0 32 ............................ AGCTGAACGAAGTCGGCAAGTATCCTAAATTC 59869 28 96.4 32 .........T.................. CTAGCAATAGGGCTTTTCTTTTACCTATAAAT 59929 28 100.0 32 ............................ ACTTTTTACATAAAAGCGGACGCCCATCCATT 59989 28 100.0 32 ............................ GTGCTTCGGATACATCAAATCCTAGAATCATA 60049 28 100.0 32 ............................ AACAGGCCTTTCCCAGGCCGACGACGGTAGCG 60109 28 100.0 32 ............................ TATGACATCTATCAGCATACCTTCTACAATTA 60169 28 100.0 32 ............................ TGTCAGTCGTCGAAAAGGTTATCTGCATACAT 60229 28 100.0 33 ............................ TTGCCAATTAGTTGATAGTGTCAACTATATGGA 60290 28 100.0 32 ............................ AATGGTTTCCCTCCCTTCTTACATGCTTCGTA 60350 28 100.0 31 ............................ ACAAAGACTACTTTTATGCCGTTGCGTTTGC 60409 28 100.0 31 ............................ GAAAATGAATGGCTATATTGCGGAATGTGTC 60468 28 100.0 32 ............................ ATTGAATTTTAAATTCCTGACTGGATCATCGC 60528 28 100.0 32 ............................ GTTGGCATGGTTGAGCCATTCTTGACTCCAAA 60588 28 100.0 31 ............................ GGAAAGTCTTTCCGATTCCAGGCATCGAGTT 60647 28 100.0 32 ............................ ACAAATCGCGCCTGGGTATAGTACAAATTCGT 60707 27 96.4 30 ......................-..... TTTAGTACCAACTGATTAAGATCTTATTTG 60764 28 100.0 30 ............................ TAAAAGGTAGTACACCATGCAAGATAAATT 60822 28 100.0 32 ............................ AATGTAGAGAGTTGGGACGATATAAGGAACGC 60882 28 100.0 32 ............................ TGTACGATAATATTTATACAGTTATCAATCCG 60942 28 100.0 32 ............................ GCCGATGTAACCGAGCAAACCGCTGGCGATAC 61002 28 100.0 32 ............................ AATAATCGAGAATCTTTTCTACATCTGCATAT 61062 28 100.0 32 ............................ AAAAGGTGGCTGATGCAGATGAATGACATACA 61122 28 100.0 32 ............................ ACCAGTGGGGAGGAGAGAGGGGTGCTTATGAG 61182 28 100.0 32 ............................ CATGGCTGCCTCTTATTTCCCGTTGACTAAAT 61242 28 100.0 33 ............................ CTTCTGCCCATTCTTTGCTGATGTTTGCATATC 61303 28 100.0 32 ............................ ACGAAAAATACCCGGACGTCACATGGAAATGG 61363 28 100.0 32 ............................ GAATTAACCTTGCCGGAAGCAAAGGCCTTTTA 61423 28 100.0 32 ............................ CGTAACGGGTTGTGCGGGCTGTATCTTCATAG 61483 28 100.0 32 ............................ TTCGAGAGCGTCAGCTGCTCTTTGAGCGTCTT 61543 28 96.4 32 ...................A........ GTTCTGGGAATGAAGTAAGGTGGCTGCTTTCC 61603 28 100.0 32 ............................ ACTTCATCCCACCATGTGTATGTAAGAGGTGA 61663 28 100.0 32 ............................ GTTAGTCGATACCGATGGTGTTGCGTAAGTAT 61723 28 100.0 32 ............................ TTCCAATGAAAAAGACAGCAAATCTTTACCTC 61783 28 100.0 32 ............................ GAAAATCCAGGAAGAACGGGAAGCCCTGGCAA 61843 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.6 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCTGCAGCGTTTGAATCTGGCCGATGCACTGATGCGTTTTGCCCCAGATTATGTGAAGATTACGACAATCCGTCAGGTTCCTATCAGGAAATGTAAGGGATACGTGACATACAGCCGATATCAGCCGGAAGCTACGGTTATGCAGAAAGCTAGACGCTATGCAAAGCGACACGGTATTTCAATAGAAGAAGCACAAAAGCTTTTTCCCACGGCTGTCAGTAAAAATCGCTATCCGTATATCCAGCTGGAGAGCATGACCAATCACCATCGTTTCAGCCTGTTCATCCAGAAGCAGGAAGCCGTAGAGCAGCCATGCAGCGGTTTCTCTGCCTATGGATTCAGCAAGAAATCGTCTGTTCCTGATTTCTGACCCAAGTTTTTACTATGTACCGGAAAGCCTTGTAAATCAAGGGTTTTGACAAGCGCATAAAATTTTGGTTAAATAAGAGTAGACTGATGCAAGCTTAGGTAGAATCAGGATATTCGCATAAAAGCCTACT # Right flank : ATTGAAATGATTCTTCAAAAGTTCATTCTGCGATTAAAATTTTCACATCCGATTCTGCATAGAGTGCCGCATAGCCAGCCAGGGCGATGCGGCCTTTTTCTATGTGGCAATAGAGTTAGCCACCTCGTTTCGAGGCCTGATAGGCGACGAGGTCGGTTTTGCCGAGTTTGGCTGCCATGACGGGGATGATGTGGCAATGGCCGCTGCCGCAGACCGGGTCTTCTGGGACGGCGAGTTTTGGTGCAAAGGATCGGCTGACCGTGTCGTATTTCGTGCCTTTGGCCGTGATGTTGCAGAGGAGGCCGTCGAGCTGCTTGATTTTGGCCATGTCAGGCTGGCAATGGATGACTTCTCCTTCGTCGGCCAGGACGCAGACCAGGTCGCGGGCGAGATAGGCTTCGACAGGTCGGACGCCCAGGGCTTCTTCCATGGCATCGGTGACCGAGACGGGCTTCATGTCATAGGCCGGGAAATCCATGGAGAAGCGGTCGCCGTTACGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81872-83386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMON010000011.1 Megasphaera elsdenii isolate MGYG-HGUT-02547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 81872 32 100.0 36 ................................ CCATATGGAATATGATGCAACAAAGCCTTATTATAT 81940 32 100.0 38 ................................ CGTCGACAACGGGCGCGTGTCGTTGATTTCCTGCAAGG 82010 32 100.0 34 ................................ TCGTCTGACTCGAGCGTCCTGGCAATCGTTGTAG 82076 32 100.0 34 ................................ AAGCAATCATCCGAAGAGCGTCTGTCCGATTGAC 82142 32 100.0 36 ................................ CTACGTTGAAAACCTGTTGTGTGTCTTGCAATCCTG 82210 32 100.0 34 ................................ CCAGCGAAAGGAGTTGATAGCATGGGACGACATA 82276 32 100.0 36 ................................ TTATTCAAGCATTAAAACAATCACTGTCAATCGAAA 82344 32 100.0 35 ................................ TAAGAGTCACAAAAAAGGGCGTACTAATTACTCTA 82411 32 100.0 35 ................................ TAATACCTAGGACGGTCGTTCCGTCAAAATAAGCG 82478 32 100.0 35 ................................ CTTGTAGTTTGAATAACGGAAATTGTAAAAATCGG 82545 32 100.0 37 ................................ ATGGTACTGGCTTATGCAAGATAAATCGGGGGATCAA 82614 32 100.0 36 ................................ TGCTTGATTCCGCTTGATGTTCTTTCTTTCCTGTTC 82682 32 100.0 36 ................................ AAAATAAGTATGGATTGACTTGTCGAAAATGGTTTC 82750 32 100.0 36 ................................ ATGATAATTTATCAGCTGTTGCTCGATGACCCAAAC 82818 32 100.0 35 ................................ AGAAGAAGTGAGCAATGATTTGTTTGTTTTGTCCT 82885 32 100.0 37 ................................ TTGAATATCGAAAAGAAGCAGACAAAGGGGCGGCTAG 82954 32 100.0 34 ................................ TCAGCCAGGGTCATGTCGACAGACTGGTCGGCGA 83020 32 100.0 34 ................................ AAATTAGCCATCACTGGCCCACCTTGCCGTTTTT 83086 32 100.0 34 ................................ ACCGACAAATGTAGCGGTAAAACGCTGAAACGGC 83152 32 100.0 35 ................................ ACATACAAGCGAATCAATGTACAATCTCTATTCAT 83219 32 100.0 36 ................................ TATAGTATAATCTACATAAGCTCTAGTTTTATCTTT 83287 32 100.0 36 ................................ GTCCGGCATAAAGGCATCATCGATAAAGGGGTACAA 83355 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 23 32 100.0 35 ATCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAGACGGCTATGTATCAGCCAACCTGGCACGGAAAGTGACCGGTTTCAGTGAAGACGATTTACAGTATTTATGGAAAGCCATCATTAATATGTTCGAATACGACCATTCCGCTGCCAGAGGGAATATGGCTGTGCGCGAACTCATCGTATTCAAACACGATAGTGAATTGGGAAATGCTCCAGCATATAAACTTTTTGATACTGTTCACGTCCAGAAAAAAGAAGGCGTCGTCGCGCCCAGGAACTATACGGACTATGACGTAACCGTAGATGAAAGCAAAATCCCGGAACACGTTACGTGTACCCGGATGATTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCT # Right flank : AGCCACAGGACTTGCACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64790-65471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMON010000005.1 Megasphaera elsdenii isolate MGYG-HGUT-02547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 64790 23 100.0 52 ....................... TTGATGAAGGATTCATCCAAGGATTCCAGAATCTTGTCATGATAAGAACCAT 64865 23 100.0 49 ....................... ATTAAGTTTATTTTCTTCATTCCATGTTGTAATGGCCGATAAGAACCAT 64937 23 100.0 50 ....................... TATTTCTGCTTGCTCGTAGTTTTTGAGCTTGCAGTATGGATAAGAACCAT 65010 23 100.0 50 ....................... TTACCCTTCTACGATATATATGTCGATTCTACCGACGCGATAAGAACCAT 65083 23 100.0 52 ....................... AACCCATAATTCACGACGTTATACCATGACTTTTTTGCTTGATAAGAACCAT 65158 23 100.0 49 ....................... TATTTTAAATTTAAGACCACAATAGCTACTAATGCCAGATAAGAACCAT 65230 23 100.0 51 ....................... CTTTTCTTTCGTGTGGATTTCTCCACTAATACTCTTGAAGATAAGAACCAT 65304 23 95.7 49 ................G...... GAACTTGAAATGGAAGACATGAGTCGTATTTCACTGTGATAAGAACCAT 65376 23 100.0 50 ....................... CGGCCCCGAAAGTCTATGTTCATCGGGAACCAGATTTTGATAAGAACCAT 65449 23 82.6 0 ..................T.TCT | ========== ====== ====== ====== ======================= ==================================================== ================== 10 23 97.8 50 AATCCCCGTAAGGGGACGGAAAC # Left flank : TGTTGACGAAATGCCTCAGAGAACTGGAACAGGACAAGTTCATCACAAGGAAGCAGTACAGTACGATACCGCCAACGGTTGAGTATTCACTGGCAGAACGGGGAAAGACATTGATCCCGGCACTGGAGTCGGTATATCAATGGGCTGATGACCAAATGAAGAAAGAAAACAAAATTCAAACATCTGACAGTCCCTCATAAACAACACAGCCCATGCTTGTCTAATAGCAGATCTTTACGAGTCATGAACTATGGTTTTTGATGGACTTGTGATACAATATAAGTTAGTTAGGTAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATTATTCCGCCCCGTTGGCTTAAAAATCAGCGATAGGACAATTTTTGAAAATCATTTTCCACAAAAATGTGAAAAATGAGGAGAAAAGAAAATCCACCCCGCAAAAGGCATTTTCGATGGCGCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : TATTTGAGAGGTGATGTGAAATGAGCTTTGCTTATATTACGGAAAAAGGCGCTACGATTTCTAAAAAAGACGGACGCTTTGTTGTTGGACGAAATCATGAAACCTTGTTGGAGATTCCAGAAGAAACATTGGAAGGCTTATTAGTAACGGATACGGTCCAGCTTACATCACATGCCATAGTGTCTTTATGAATAGAGCAGGAGGTTTCATGTTTGACATCGAATACTTATAATTAAGATTTATTCATTGTCATATGGAAAGGAGTTGAGGTGGTTGCCTGTCACTGAAATAGATTTAGAGAAAGCCGCCTTATTACATGATATTGGAAAACTTTATCAACGAGCTGGGAAGATTCGCAAATCCCACTCCGTAGTGGGGCAAGAAATCTTGGCCCATTTTTTTGATGCCAATCATCAGGCTATTTTGCGGGCTGTCGCTTGCCATCATCAAAATGAGTTACAAACGAATCATCTTCCAGACGATGATATTAGTTATATCGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 74259-74576 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMON010000005.1 Megasphaera elsdenii isolate MGYG-HGUT-02547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 74259 23 100.0 49 ....................... CATAATGTTTTCCTCCCATTCGATTTACTGATTATTCGATAAGAACCAT 74331 23 100.0 50 ....................... TGGACAAAATCGCAGATTTTATCTATGATATGGCGGTCGATAAGAACCAT 74404 23 100.0 53 ....................... TTTTCACGCAGCTAATTACGTTATCGTCTTTTTCGGACTTAGATAAGAACCAT 74480 23 100.0 50 ....................... TGTTCAGCCGTTGCGATACTTGCAAGGGCCTTCTTTGTGATAAGAACCAT 74553 23 91.3 0 .............A........A | T [74573] ========== ====== ====== ====== ======================= ===================================================== ================== 5 23 98.3 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : AAATGCACGGCCCGTGACGCCTTCGGCTCGTAATAAATGGCCCCCATCGAGGCTGCGTAGGGGCTTCCGCGTGGGAAGCCGCCAGCGAGATTTGACCACAGCCAGTTCGAGTATGATGGCAGGCTTTTACGAGCCACGAGCCACGAGCCACGGACCACAGTTTTTCCTCGGACTCAGATGCGGTGTTCCACTGCGAGGTTCGACCATAGCTTATGCTTGTCTAATAGCAGATCTTTACGAATCATGAACTACGGTTTTTGATGGATTTATGCTATAATATAAATTAGTTAGATAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATCATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACGATTTTTGAAAATCATTTTCCACAAAAATGTGAAAAATGAGGAGAAAAGAAAATCCGCCCCGCAAAAGGCATTTTTGATGGCTCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : AAAAAGCAGTCTAATTTTCGTGTTTTCCTTTTTTGTGGAAAACTTTGATGAAGTGTCGCCGCACACTCGTGACTTTAGTCATGAGTTAGGCGGCACATAACATATGTCATTGTAAAATCACAAATAAAACCTTGAAATAATTTAGCTTTCATCCTGCATATGCTATTATATATGCAGGAGGTGAGAATATGACAATAGAAACCCATCATGGTCGAGGATATGTCTATTGTTTACACTACCATATCGTTTGGTGTGTGAAGTACAGACATAATAAGGTACTGACACCAGAAATTGTCGAAGACCTTGTTCAGATACTAGAAAAAATAGCCAATGACAATGACTTCGAAATTTTGGAACTCAACATAGACAAAGACCATGTACATATTCTCATAGACTGTTCCCCGCAACACTTCATCCCAGATATAATGAAAGCTATTAAAGGCGTGTCTGCTCGACTGCTTATGAAAAAGCACGGTGATACGCTCAGAAAGAAGCTCTGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.33, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //