Array 1 91068-95457 **** Predicted by CRISPRDetect 2.4 *** >NC_014657.1 Caldicellulosiruptor owensensis OL, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 91068 29 100.0 36 ............................. TACCCAGAAGCGCATAAAAAGCCAAATCGCTCTTGT 91133 29 100.0 35 ............................. TCGATGAAGCTGGTGGCGTAGGGCTTGGCTTCGAG 91197 29 100.0 39 ............................. GATACGTCAAAGAAATCACGCTGGAAGTTGATGCCTATT 91265 29 100.0 38 ............................. GCGCTAAAGATTGACAATACTCTTCTATTAGCCCACGG 91332 29 100.0 36 ............................. TACTCTTGTATTTTGAATCTAAACCTTACAACACCA 91397 29 100.0 37 ............................. ATGTAATTACAGTGGCATTGCATATTGCAATGCTTCG 91463 29 100.0 37 ............................. GTTGTTTAGCTCATCCCTTATCCAATCCATGAGTGGC 91529 29 100.0 37 ............................. AGTGAATTGATTGAAAAGAGAGAACAAGAAGATAAAA 91595 29 100.0 40 ............................. GTAACATGTGTTGTTGTCGTTCGCCTCGACAGAATTGTTT 91664 29 100.0 36 ............................. TTATAAGTCCCTAACCCATCGCACTTGTAAATCGTG 91729 29 100.0 37 ............................. TGCACAATGCAGGGGGCTGTTTTGGTATATACAAACA 91795 29 100.0 37 ............................. AAATGGTCTTATAAGCAGAGAGACAGCACTAAAGAGG 91861 29 100.0 38 ............................. GCTCATTGACTATAAAACAGACTACGGTCTGGTAGCAG 91928 29 100.0 38 ............................. TCAAAGGTGACTAAAAACGGTGCAACAAATTGATTTAA 91995 29 100.0 37 ............................. TACAGTCAGTTCAATTTGTCCTTTTCTAATTTGGTCT 92061 29 100.0 39 ............................. TAGCAGTGAAATTCAAAAAATCATAGCCGAAAAGGGATT 92129 29 100.0 36 ............................. GAAATAAACAAACGTATAGATTATGTAATGATGACA 92194 29 100.0 37 ............................. GATGTACATGTTGACCCTGCAACATGGACCCCTGCTG 92260 29 100.0 37 ............................. TTGCTCTCTGCGTCGGGCCTGTTCTTGCAGATCCTGT 92326 29 100.0 38 ............................. ATGGGAATGATTACATTTTGCTCTAGCGGCTCTTTGAG 92393 29 100.0 36 ............................. AGCTATTATTGGTATGAAGTCCGCATCGTAGATTCC 92458 29 100.0 37 ............................. AACTGCCGTAGCTCTTCGAAATTTCCCGGGGTCACCT 92524 29 100.0 38 ............................. GCACACCCTACGACGGAGATTCCGAGCTGCTCCAAGCG 92591 29 100.0 37 ............................. GCGAAATATTGTTCTGCTTCGTCAAGGGTGACATAGG 92657 29 100.0 36 ............................. TGAGGATATAGGTTTGGAAGATGAACAAATACAAAC 92722 29 100.0 37 ............................. TTCTGGCAGACCGGCCATTTCTCTCACATAATCTTCC 92788 29 100.0 38 ............................. GAGAGTGAGCAGTACAAAGTAATACAGGAAAGTGCAGA 92855 29 100.0 36 ............................. AAAGGCTGGTAATTAGGCGAAACTTCAGCGTTATGT 92920 29 100.0 36 ............................. TTTTCAAAACTGTATTGTCAAGAGTATAAGGGTCCT 92985 29 100.0 36 ............................. TTTTCAAAACTGTATTGTCAAGAGTATAAGGGTCCT 93050 29 100.0 36 ............................. TGATTATGGTATCGTACCTGGCACCAGCAAACCTAC 93115 29 100.0 36 ............................. AAAAGCTTTTAGTATCGTCGATGCAAAACTTGTAGA 93180 29 100.0 37 ............................. ACAGCTTGTAGTGTCGGCAAAATCTTATCTGCTGTAA 93246 29 100.0 38 ............................. GTGAACTTTGTGCTATTGTAGAGGAGATAAAGAAGCAG 93313 29 100.0 37 ............................. TGTTCACTGTGAATTTGAATAATCAGCCACAAACACA 93379 29 100.0 36 ............................. AATCACTGGAGGATTTGTAACAACAGACGATGGAAC 93444 29 100.0 37 ............................. TAGTTGAGATAGAAATTAATCTTACCCAGAATGATAG 93510 29 100.0 36 ............................. GCCCACTCGCTTTATAAAGTCCTAACAGGTCAAAGC 93575 29 100.0 37 ............................. TGATTGGCAGCTCATAAATACCGCACTGTGTCGTTTT 93641 29 100.0 36 ............................. CTGGAGAGATGAAATTATTGTTTACATAGCAAATTT 93706 29 100.0 39 ............................. GACGCTGTTCGTTCTGCTTTTGTCAAACGAAAAACCCCG 93774 29 100.0 38 ............................. GCGGTCAAATTGAATGAAATACTGCAGGAATACCTGAA 93841 29 100.0 36 ............................. GGTTCTTTCACTGAATACCAGTACAAATTCACTGAG 93906 29 100.0 36 ............................. GGCTTTAAATGCGGCGTGGGTGTTATCATACTACAA 93971 29 100.0 37 ............................. GTAAATTGCCGGTTGCCCTGCTGTGGGCTGCCAGATA 94037 29 100.0 38 ............................. CGAATCCACCGAAAACAGACAGATAAGCGGAGAAGCAA 94104 29 100.0 37 ............................. GTGTATTTTACCCTTTCGACTATGTCAGGATGGTTCT 94170 29 100.0 36 ............................. TGAAGTTATGGCTTCTGACAATGAGAGTAGAGCGCA 94235 29 100.0 38 ............................. ACTTTGATCGCATACGGTCTTGGTTTCCAGCTTAACCG 94302 29 100.0 38 ............................. GTCTTTTAAATTTGTGGCTATCTGGGCTGGGTCATAAG 94369 29 100.0 39 ............................. GATCGCTCTCGACAATTCATCAACGGTCACATCCTCTAA 94437 29 100.0 38 ............................. AAGGATCGGAGCGATAGTTCATCTCCAAATACCAACTC 94504 29 100.0 38 ............................. GCGTATAAGCAATGGCATTTGTTCTTTAACACTTGCGT 94571 29 100.0 38 ............................. GTGATTATAACAACAAATTTGACGCTTGAAGAAATTGA 94638 29 100.0 37 ............................. AAGCGAGGCTTCAAGGAGCTTGTTAAACAAGACTTAA 94704 29 100.0 35 ............................. CTTCTGGCTTTACGGCAAAAATATGTGCAGCTGAA 94768 29 100.0 38 ............................. CGAGCTTTACAAAGAATTGTCGATGAGGTAATGTCAAA 94835 29 100.0 38 ............................. GATGCTGTACTCAACTTCATGGGTGTTTTAAAACCCAA 94902 29 100.0 37 ............................. TCGTTGTAAATGACGAAAGCGAAAAACCTATTGAAGA 94968 29 100.0 38 ............................. GTGAATCCTGAAAGAATTACAGTAGAAGCAGGGAACAA 95035 29 100.0 36 ............................. TCTACTTATCCCCCTTCCAAAACTGCGGGAGGAGCA 95100 29 100.0 37 ............................. GGAAGTTGAACGCCGCGTGAGTGTCAGGTATCACGCA 95166 29 100.0 36 ............................. AAGGGGAAAATAAGCGATGTTATAGATGGCGGCCCA 95231 29 100.0 38 ............................. AATTCATCGAATTTGATTATCAGCACAAAAATAAACCT 95298 29 100.0 39 ............................. TCTATTAAAACAAAATACATTTCAAACACTCCTTATCAA 95366 29 100.0 35 ............................. TTTCGATTTTTTGCTATGTTAACTTCTGCAATGTT 95430 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ======================================== ================== 67 29 99.6 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : ATATTTGTCATAGTCACATATGATATCAATGAAAAAAGAGTTAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTGTTTGAAGGTGAAATTACGCTGGGTAAGCTTGAAAAATGTAAACGTGAACTTTTATCGGTTATAGAAAAAGATGAAGATTCAGTGTATTTTTATGAAATGGAATATAAACTTGTGTGCAGTAAAAAGATTTTAGGGCAAGAGAAGAATTATGATTCTATTATAATTTAAAAATTTCAGGCCAAATCTATTTATGAATTAGTATTCCATAATAATCCATTTTGCAGCGAGGCTTATAACTACTTTAAAGTTTCTATCTTCTTTTCCTCCAAGCTTTTCAAGACCATTTACCATTTTATTACAAAACCCAACTATCCCCTCGCTGCAATTTATTTTTATTGCGAGAAATTTGCTGATAGGGTATAATACAGATGTAAGATAGAAAAGAGGATATTTGTTAATAATGG # Right flank : TAATGAACGAAAACGAGCGAAAATGACAAGAAATGAGAGTTGAAAAGAAAAGGTACCTCCGAGACTTATCAAGAATTTTGTGTTTCCATTTTATAACACAAGTTGTAGAGTTGGGTTATGTTATTGATGCATTTTCTAATACCAAAAACTCCATTTTTCCATTTTGCATAGCGTGAGTTCTTTCGCTGTAAGTAAATATTAATTTCTAAGATACAGGCAGCTGAAAGTATCCACCTGAATTTACTTCTTGTCTTTTCAATCATGCTATTTACACATAAAGCGGTGTTTGTAGAAAAAGCTTTCTTAATTTCTAAGGGTATTTCATATGGACAGAATAAAACTCTGCTTTTTCTGAGATTGCAGCAATAAAATCGAGGATATTTTGAAAGGTATCCATCACAAAGTTCTTTGAATTTCAGTACAGCTCAATCAAAATCGGAGGAAGAAATTCTAAGTCTGTTCTTAACTCCTGTTTAAATTTGCTCTTAGAACTGAGCTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 2367885-2369173 **** Predicted by CRISPRDetect 2.4 *** >NC_014657.1 Caldicellulosiruptor owensensis OL, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2367885 29 100.0 37 ............................. TAGGTATAACGGCACAAATTTTATCTTACAGGGTAGC 2367951 29 100.0 37 ............................. TATTGTCGTCTAAATGGTTTAGATACGCTGTTACATA 2368017 29 100.0 38 ............................. TTATCAAAAGAAGCGTTGTGGGCTATCAAAGGATATTT 2368084 29 100.0 35 ............................. TTCCGACGTGCGCAAAAGAGTGGACTTTGCAATGG 2368148 29 100.0 38 ............................. TTCCAGAGAGGGCCGTCCCTCTCTGGTTTTCATAACAA 2368215 29 100.0 38 ............................. TCTGAAGCTGCTTTTATCAAAGACAGAGTATATCATGA 2368282 29 100.0 38 ............................. TTTGCAACTGTTTGGAATGCAATCAAGAATGTTATTTG 2368349 29 100.0 36 ............................. TTCGGCTTGCCACTTATCCTAAAACTCTCAATAACC 2368414 29 100.0 37 ............................. TTGTATATCACACTTAGGACAATAAACGTTCAACTCG 2368480 29 100.0 39 ............................. CATCTGCAAGTTGTGAATGAAGACCCGCAATCTTCTACG 2368548 29 96.6 38 ...T......................... CAGTTGTTGCGCAGGATGTTGCTGGCTGGAGAATACAG 2368615 29 96.6 37 ...T......................... CAAAGCCAGCAGGCAATAACATAGTCCTGCGCTTCAG 2368681 29 96.6 38 ...T......................... CGTAGGATTAATAATATTATTATTCTTTTCTTTACTTG 2368748 29 96.6 39 ...T......................... CCCACCTCAAACTTGTGTTCTGTTCTGATTATACCACCG 2368816 29 96.6 38 ...T......................... CGCCCTTATCTTCAGCCCTTGCTCATCTTTGATAAGCG 2368883 29 96.6 36 ...T......................... CCGCAATGTGAGTTTAAACCATCTAAGCTGTTTGAG 2368948 29 96.6 37 ...T......................... CCACCGAAACCGTAACGGGAAATACACAGGTAAACTG 2369014 29 96.6 36 ...T......................... CAGTCGGCGGCGGATGTATTCTACCGCTAATGCTGC 2369079 29 96.6 37 ...T......................... CAGGAGGTCGCGCTTGTTTTTTTCGTACCACTCCTTG 2369145 29 89.7 0 ...T.....................T..T | ========== ====== ====== ====== ============================= ======================================= ================== 20 29 98.0 37 GTTCGTAGCCTCCCCTTTGGGGATTGAAA # Left flank : TAAAAACAAAACTTCGGAATATTTTTATTGAGAAAAATAAGGAAAAACTCTGCGACGTAAATACTATACATTACAAGAAAGGGGCTATCAAACTTTCTTTTCAGATAGCCTCTTTTTTTGATTTCTTCTTTCTTTTTAGACTACCACAAAGATCATTTTCTATAGATAGACTTTCATTTAAATTTGTTTTCTGAGTATTTTGTGGATATATCCATTAATATTCAGTCAAATTTTATTTGCAAGCAATAATTGGTTATTTTGTTATTACATTTATTGCCTTTCTAAGTCATGTATCAAATCGTTACTGAGATATAAAGCCTTTGCATTTACCAATTGTTGTCGACCTGCAGAACCCCCGAAAACCCCCGGGGGTCGACAGCAAAAGGAATATATTACCATGTGTTGACTTTCAAGAGTTTGTGGAGTATAATAGAAATAACTTATAGCAGCTTGAAACTTCATCCATTTGTTCCTCATAAGACTTTACAAGCTCTCTACGT # Right flank : TTTTAAAGGTTTGAAAACTGAAATGTGCCTTTGTTTTTTATTTCATAAAAATTTCATTACCCTAAAATAGCCTCTTCAGGGCTGAAAATCTCAAATTTTTAATCATTGCTCTACATTCTTTTTGCCCCATAATCCAATGCTTCCATCATTTCTGTCAACCTCTTTAAAATGCCAAACGAAATGTAAAGATTTGTGGTATAATTAAATTGTGAGAAAAACAAAAGAAAATAAAAAGCCATGTATTTGATTAGTGTATTTTTACATCTTAATTGAGAACCAGTCAACAGTAAGAAGAGATATGGCACAAAAGATACTAAAGTACATGGTAAGCCTGTGGTGAAAGGAACTTAGCAATGGTGCAGAAAACCTGCCGCCTGTTATACCCATAGTGGTGTACAACGGAATAAAGGAAAAATGGAGTATTTCTACTGATTTAATGGAAGCATTTGAAACCTTCAAGGATGACGTATTCAGATACAGAGTAGTTGATGTAGTTGAGA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTAGCCTCCCCTTTGGGGATTGAAA # Alternate repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 2382387-2383146 **** Predicted by CRISPRDetect 2.4 *** >NC_014657.1 Caldicellulosiruptor owensensis OL, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2382387 30 100.0 36 .............................. CAAATCAAATTGTCTCAAATATTTTTGCCTTTCTAA 2382453 30 100.0 37 .............................. TAAAAAGTCATTCCTCCACCCCTTAGTATCCCCAATC 2382520 30 100.0 37 .............................. GAAAATCCAAATGCGAAGGAAACTCTCATGCAGGTTA 2382587 30 100.0 35 .............................. ATATTATTCTGTTCCTGTTTCTGTTCCGGCGATGG 2382652 30 100.0 37 .............................. TTCTTTGGATGAGGTTTCAAAAGCGTCGTCTTCACCA 2382719 30 100.0 36 .............................. TGATGATTTCGTAGCTGAAATATCCTGCACCTGCAA 2382785 30 100.0 36 .............................. TCCTTGAAACACCAGAATACAGGAGCGCATTTTTCG 2382851 30 100.0 35 .............................. AAATATTTTGCTTGGTCAATCACAAGTGTTCTTTG 2382916 30 100.0 38 .............................. ACAAACCACCGATTTTTTTTGAATTTTTTTCACTGTAA 2382984 30 86.7 34 ...........C...............GGA GAGGGGAGAGCCTCCCCTTTGGGGATTGATGAGA 2383048 30 73.3 39 .GGGAGG....C....C............. TAATCGTGGATCAAACGTGCAAACGACCAACTGAGGATG 2383117 30 83.3 0 ................C....A.....GGT | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 95.3 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : AAAGTAAAACAGGCTTTCTCTTCATATTTGAAAAGTTGGTTAACTTCTTCCCCGAAAAATCTTGTTATTTAGATGAGTGCTATTTAATAAGTGAACAAGCCGAATTTTTATTTTTGACTCTTTCAATATACCTTTTGTTGTTAGTTTCTTTAACTTTTACACTCAGCAATATTCAAAATACTTGAAGAGGTAGAAATTAATCAGCTTAACTTACTACTTGATGCAAACCAAGCTGTATTCTGTCAACTTTTTCTTGCTATGTTATGGCATTTTTATCCATTTTGCTTTGTGTATTTTGGAATTTAAGTTATTTAGCATTTTTGTATTTTCCAATTGCTGTCGACCTGCAATCCCCCCGAAAACCCCCGGGGGTCGACAGCAAAAGGAATATATTACCATGTGTTGACTTTCAAGAGTTTGTGGAGTATAATAGAAATAATCTATAGCAGTTTGAAACTTCATCCATTTGTTCCTCATAAGACTTTACAAGCTCTCTACGG # Right flank : TGTAAAAGGAACTTATCTTAAGGGGATAGAAAAAGAAATTGGTAAGCACTTTTTGGAATCTAAAATAAGCAATGTATCTTTTGCTTACATAGTGTGGTATAATAAAAGTCTACAGAAAAGTGTGCAACATAAGAAAAAGGAGAAAAGCTGTGTGCAAGAAATTGCCACCAAAAGAGCATGATACAACATTTAAGTTTTTGTTTTCAGACAAAGACGAAATACTTTTGCTGGTAAAAGATATACTTTGCTATACATGGGCAGACAGGATTGAAGAAGACTCTATTGAACTTGTCAAAACAAACTATGTTACTCATGAGTTTTCACAGGTTGAGGCTGATGTTGTTGCAACTGTAAAAAAAGAGATGCAGCAAAAGATTTTAAAGTACATGATAAGTATATGGGCTGATGAGATAAGAAAAGATGTTCAGATTCTGCCAGCAATTATTCCTATTGTTGTATACAATGGAATAGGTGAAAGATGGAGTGTATCGACCAATCTT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //