Array 1 85956-86915 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYQ01000004.1 Pediococcus acidilactici strain UMNPBX20 NODE_4_length_302611_cov_95.1775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85956 36 100.0 30 .................................... AACAATGTTCGGTACCGATGCGGTTCGTGC 86022 36 100.0 30 .................................... GAAGCGGACATTGCTTCGGCAAAGGCGGAA 86088 36 100.0 30 .................................... ACCAAGCCATACCGCAGTAATGAAGGACGC 86154 36 100.0 30 .................................... TGATTGATTAATCAATGTTTTAAGAATCGG 86220 36 100.0 30 .................................... CTCAAATTGTTGAAGCGAATATTAAGTTCG 86286 36 100.0 30 .................................... TCGGGAATGTCGTCAACTTCCGTGGCGTGT 86352 36 100.0 30 .................................... AAGATTGATTATGCAAGAATGACTGAAAAA 86418 36 100.0 30 .................................... CCCATCAACAACCTAACACGGGGGCAAGGG 86484 36 100.0 30 .................................... TTCATCATAATGTTGAATATAGGTATCCCT 86550 36 100.0 30 .................................... TAGGCAGTGTTGCATTTGCCGCAATTCCGC 86616 36 100.0 30 .................................... GATAGGCTTGGAAATGATAGATAACAACAT 86682 36 100.0 30 .................................... ACCGAGAAGCAATACTTTGTCCCCTCATCT 86748 36 100.0 30 .................................... ATTTATCATAATTATATCCACTACTTAAAT 86814 36 100.0 30 .................................... TCCCATCCTCCCAAAGCCAATTCGAGCGGA 86880 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAGGACTTAGTTATTCAAAAGTATTTAACTAAGATTGAACGGGTTTTTGCCGAAGGGTTGATGGATGAGCAACGTAACCAAATTCATGATCAGGTAAACCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTGATGTTGCACATTATTTGACAGCGACCCAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : CGTGGCTGGTTAGTTTGGGTATCTAAGGGAGTTTTCAGAAGGGGAATAAAGTTAAATGGAAGTCATAAAAAAGAGCCAAACAAGAATGAAAGGTTAACAATATTACTGGCGGTAATACAAACCATAATAAGAACTCTAGATTGGCTCGGGTACAGTTTTAAGAAATAGGATTAAGAGACGTAGATCTTTTTTGCCGCTCTCTATATATATTTTATAACGGAGGAATAAAAAAATGAAAAGAGAAAAAGCAGTTAACATAGTTATTGTATTGCTGTTAATTTCAATCGTGTTATCTATTTTAAATCTATTTAAGTAGGTGTGTATCGTGAGTTTAATAAAGAAGCACCTAGATTCTTATAGGATTGCTAAAGATAATAATATTACCTAGCCAATAATGACAAGGGGAATTAATAAGGACTTGGATAACTTATCGTTTAAGCATCTTAAAGCTATCTCCACTTCCCTAGGAAAAGATATAGTAACTTGTCGCAAAAGAATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //