Array 1 166345-164557 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIF01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2065 NODE_4_length_276782_cov_6.70384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166344 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166283 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166222 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166161 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166100 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166038 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 165977 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 165910 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 165849 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165788 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165727 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165666 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165605 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165544 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165483 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165422 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165361 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165300 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165238 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165135 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165074 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165013 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 164952 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 164891 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164830 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164769 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164708 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164647 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164586 29 96.6 0 A............................ | A [164559] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183970-182477 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIF01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2065 NODE_4_length_276782_cov_6.70384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183969 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183908 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183847 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183786 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183725 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183664 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183603 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183542 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183481 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183420 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183359 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183298 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183237 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183176 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183115 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183054 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182992 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182931 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182870 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182809 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182748 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182687 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182626 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182565 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182504 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //