Array 1 100776-98610 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZQ01000003.1 Salmonella enterica subsp. houtenae serovar 50:z4,z23:- strain 63-2049 NODE_3_length_276010_cov_3.95414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100775 29 100.0 32 ............................. AAACCCTTTATTGATTAAATCATTCATAGGCA 100714 29 100.0 32 ............................. TATATTACCAATGTCGAACAAACAGCAATTAA 100653 29 100.0 32 ............................. TCTAATTCAACCCACTGACAATGGTGCTTTGA 100592 29 100.0 32 ............................. CAAATCGGACAATCTAAATTAGCGACATATCG 100531 29 100.0 33 ............................. CCCAAAAATTGGAAACGCTTAATACAAGTTTGC 100469 29 100.0 32 ............................. AGCGATAAAAATCTACCAATTAGCGCCTCAGC 100408 29 100.0 32 ............................. ACAACGCCGTAATTGTTAACGTTGCAAATCTT 100347 29 100.0 32 ............................. GGGTGGCTCGAAGAATTTTATGGGAGGCTTGG 100286 29 100.0 32 ............................. TTTCTTATGTTGCAAAATTTCCGTTTAAAGGC 100225 29 100.0 32 ............................. ATTTCAGAGTTGTGCATGTTGATTAGTTTTAA 100164 29 100.0 32 ............................. TAATAACCTATTGATATGACAAGCCGGGCGGC 100103 29 100.0 32 ............................. GTAATATCATTAATAAAGATGGTGATACCATT 100042 29 100.0 32 ............................. GCTATCATATGCACCGAACAGACCTGCTTCAT 99981 29 100.0 32 ............................. AATGATAGTGCCTATGCAACTGTAGGCATGAT 99920 29 100.0 32 ............................. TTTCATGCTCTTTAAAAATTAGCCGTAAATGT 99859 29 100.0 32 ............................. GTCATCCAATCCAATCATTTTTATATTATTCG 99798 29 100.0 33 ............................. AATTATCAAACGGTTCAATAACCCAGACGCCGC 99736 29 100.0 32 ............................. AATGCGCTGATTTCGATTGGTCTAGCGCGATC 99675 29 100.0 32 ............................. AATTTGGATACTCAATGTTTCACCCAATTCAT 99614 29 100.0 32 ............................. GTTCCGGTGATTGGGAAGAAAATAGAAGATTT 99553 29 100.0 32 ............................. CCCACGGGCACGAATTGGCGCTAATCTGTAAC 99492 29 100.0 32 ............................. GGGTTGGGCCAATGCAACCGATGACCGCCTGT 99431 29 100.0 32 ............................. AACGCCGAAAGGCCACGCGTGCTGGCGGTCGC 99370 29 100.0 32 ............................. CAAAATTGTTTGCGGCTGAATTGCAACAGCGC 99309 29 100.0 32 ............................. GGGCCCTCGGTTTCCGCGAGACCTGCAAGTTG 99248 29 93.1 32 .............T..............C AGGTGAAAGATGCGCGCGTGTCGCTGATGTAC 99187 29 100.0 32 ............................. CGCTAAAATAACCCCGCCCCATCCATCTTTTG 99126 29 100.0 32 ............................. TAAGAACCCGCCTGAGCACGGAGGATTGAAGC 99065 29 100.0 32 ............................. GGAGCCGCCATTCCGGCTTGCTGCCTAGGCTG 99004 29 96.6 32 ...C......................... TAACGAATCTTATTAATATAGGTATGATGGGA 98943 29 100.0 32 ............................. GGGTCGCATCCTCTCCGACAGACAGCAGAATG 98882 29 100.0 32 ............................. ACGAATTATTTTCCGTGTTAATGGACCAGCGT 98821 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 98760 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 98699 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 98638 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCTTCAGTTTTGCCCGCGCCGGTAACGTCTTCCAGAATAACCAACTGCGGGCCTGGGGCTGAGATATCCAGCGTGCTCGCCCGTTCCTGAAGCGGAGTGAGCGTACGGATAAATGGAAACAGCGCCTGATGGCCCTGATAATGACGATGCTGCGATAATGGCGGGATTTTTCCAATGGCCTGCCGTGCTTTTTCGCAGGCGAGGAGCCAATAATCTTGTAGAGGCATCGGCTCACTAAGCGGGGGAAACTGGGTTTCATCCGAGCCTATCCAGTCGGCCAGGGTTGTCAGACCAGCAAAAAACCAGCTCTGCTGCTTTAGACATTTTCTGCCCGTTTTAACGCGCCACTCCTGCGGTAGCGTAAAGGGGAATAACCGGCTTAACGCTTCCAGGTAGTGCGTGGCGGCAACGATATCTTCATCGGCGAATGCCAGGGCGCTACTATTTTTCAGCGTATCGGGAGGAATACCATGATGCCCGGTACTTATGAGCATCCAG # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //