Array 1 214086-211982 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGG01000009.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N45402 N45402_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214085 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 214024 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 213963 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 213902 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 213841 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 213780 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 213719 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 213658 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 213597 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 213536 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 213475 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 213414 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 213353 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 213292 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 213231 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 213170 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 213109 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 213048 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 212987 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 212926 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 212865 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 212804 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 212743 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 212682 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 212621 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 212560 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 212499 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 212438 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 212377 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 212316 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 212255 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 212194 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 212133 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 212072 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 212011 29 96.6 0 ............T................ | A [211984] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232279-230848 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGG01000009.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N45402 N45402_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232278 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 232217 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 232156 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 232095 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 232034 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 231973 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 231912 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 231851 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 231790 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 231729 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 231668 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 231607 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 231546 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 231485 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 231424 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 231363 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 231302 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 231241 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 231180 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 231119 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 231058 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 230997 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 230936 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230875 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //