Array 1 1099-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYV01000054.1 Xanthomonas fragariae strain ICMP 659 isolate ICMP 659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1098 28 100.0 32 ............................ ACACTAGGCCCGTAGTGAGACCGGCGAGGTCG 1038 28 100.0 32 ............................ AACGTCTCTCCTCGTATACTATCGAATGTGTT 978 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 918 28 100.0 32 ............................ AGCTTCGAGGAACAAATCTGATCGCTGCAACG 858 28 100.0 32 ............................ AATCCGACTATCTTTAAGCATAGTCTGTCCGG 798 28 100.0 32 ............................ TGATGGTTGCGGAAAATAAAGGTCTGATCCTT 738 28 100.0 32 ............................ AAGGAGCAGTGATAAACAATCAGGGTACCGCC 678 28 100.0 32 ............................ TTGGTCGGCCCAGACAGCATTATTCATCATGA 618 28 100.0 32 ............................ CAAATTAAGAAGTGGGATACCGGAGTAGTAGA 558 28 100.0 32 ............................ TACTGTTACTGTGGGTTGGCCCGCACTCCAGT 498 28 100.0 32 ............................ ATCCGTCCGGAGCACCACCGGAGTAGGTCCCC 438 28 100.0 32 ............................ CGCACGTGCTGGCGGAGAAAGACTGCTGCAAG 378 28 100.0 32 ............................ GAGCTGTGTGCACCAAAGTTGCCCTCCTCGGG 318 28 100.0 32 ............................ GTACGGCAGCACCCGCTTTAGCTGTGCTGAGT 258 28 96.4 32 T........................... AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 198 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 138 28 100.0 32 ............................ TGCGTGCAGCCCTAGCGCGACTAGGCTCAGCA 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : ATGCTATGGCAGAACGGCTCAGAGTTTCGTACTGTTCACTGCCGCGTAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3003-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYV01000426.1 Xanthomonas fragariae strain ICMP 659 isolate ICMP 659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3002 28 100.0 32 ............................ ACACTAGGCCCGTAGTGAGACCGGCGAGGTCG 2942 28 100.0 32 ............................ AACGTCTCTCCTCGTATACTATCGAATGTGTT 2882 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2822 28 100.0 32 ............................ AGCTTCGAGGAACAAATCTGATCGCTGCAACG 2762 28 100.0 32 ............................ AATCCGACTATCTTTAAGCATAGTCTGTCCGG 2702 28 100.0 32 ............................ TGATGGTTGCGGAAAATAAAGGTCTGATCCTT 2642 28 100.0 32 ............................ TACGGGCATCACGGCGAAAGGCACTCAGCGAA 2582 28 100.0 32 ............................ AAGGAGCAGTGATAAACAATCAGGGTACCGCC 2522 28 100.0 32 ............................ TTGGTCGGCCCAGACAGCATTATTCATCATGA 2462 28 100.0 32 ............................ CAAATTAAGAAGTGGGATACCGGAGTAGTAGA 2402 28 100.0 32 ............................ TACTGTTACTGTGGGTTGGCCCGCACTCCAGT 2342 28 100.0 32 ............................ ATCCGTCCGGAGCACCACCGGAGTAGGTCCCC 2282 28 100.0 32 ............................ CGCACGTGCTGGCGGAGAAAGACTGCTGCAAG 2222 28 100.0 32 ............................ GAGCTGTGTGCACCAAAGTTGCCCTCCTCGGG 2162 28 100.0 32 ............................ GTACGGCAGCACCCGCTTTAGCTGTGCTGAGT 2102 28 100.0 32 ............................ ACGACCGCCTCATGGCTTCCTGCGTGCAGCCC 2042 28 100.0 32 ............................ GACGATCTTCTGGGCAAATACCCGCTGAAACT 1982 28 100.0 32 ............................ TGCGTGCAGCCCTAGCGCGACTAGGCTCAGCA 1922 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 1862 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 1802 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 1742 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 1682 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 1622 28 96.4 32 .....A...................... ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 1562 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 1502 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 1442 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 1382 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 1322 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 1262 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 1202 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 1142 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 1082 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 1022 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 962 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 902 28 100.0 32 ............................ TGGCTGAAATTTACAAAGGGAGCAGTAACTCG 842 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 782 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 722 28 100.0 32 ............................ TGATGCACTCGGCATACGCGCCACCGGTGGAC 662 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 602 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGCTCAGGCCATAGCTGTTGAAGCTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACACCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGCCAGGTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //