Array 1 175898-177778 **** Predicted by CRISPRDetect 2.4 *** >NC_005863.1 Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 175898 32 100.0 33 ................................ CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT 175963 32 100.0 35 ................................ GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA 176030 32 100.0 36 ................................ CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC 176098 32 100.0 33 ................................ TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA 176163 32 100.0 34 ................................ ATCACACACCTCGCTTGCTCTACGTTCCTGCATC 176229 32 100.0 32 ................................ CAGTTGGAGGAAGACCATCAACAGTTCCATAG 176293 32 100.0 34 ................................ ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG 176359 32 100.0 35 ................................ TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG 176426 32 100.0 35 ................................ CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG 176493 32 100.0 35 ................................ TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG 176560 32 100.0 35 ................................ GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG 176627 32 100.0 33 ................................ GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG 176692 32 100.0 33 ................................ CGAAGAATTACGCGCAGTACGAAATTGACGAGC 176757 32 100.0 36 ................................ ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC 176825 32 100.0 33 ................................ AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG 176890 32 100.0 34 ................................ ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT 176956 32 100.0 33 ................................ AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG 177021 32 100.0 33 ................................ TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT 177086 32 100.0 33 ................................ GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA 177151 32 100.0 34 ................................ ATCCAGATACCGCAGGATGATGACAACTACCTGT 177217 32 100.0 33 ................................ AACATCGGAACGGATGTTGACCGTGTTGGTGGA 177282 32 96.9 34 ..........G..................... GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC 177348 32 100.0 34 ................................ TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG 177414 32 100.0 35 ................................ CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA 177481 32 100.0 35 ................................ ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC 177548 32 96.9 33 ..........G..................... GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG 177613 32 100.0 35 ................................ AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT 177680 32 93.8 33 ........T.G..................... AGCTCTCCCTCTTTGACGACAGCGCGGCACGCC 177745 32 75.0 0 ..........G.A....T.G.A..CG.C.... | CT [177762] ========== ====== ====== ====== ================================ ==================================== ================== 29 32 98.7 34 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Left flank : GGCTACCCGCCCTTTGTATGGAAATGACGCCATGCTCGTATTGATAAGCTATGACGTGAGTTTCGAAGACCCGGGCGGACAGAGGCGTTTACGGCGCATCGCCAAGGCATGTCAGGACTATGGACAACGGGTGCAGTATTCGGTCTTCGAATGCGTGGTCGACCCTGCACAATGGGCGAAGCTCAAGCATCGGCTACTCAGCGAGATGGATAAAGAGAAGGATTGCCTGCGCTTCTACTATCTGGGGGCCAACTGGAGAAACAAGGTCGAACATGTGGGCGCAAAGCCCGCCTACGACCCAGAAGGCCCCCTGATTCTGTAGCGCGAACCCCAAGCGACCCTGTTTTTCCCGGCAGGTTCGCGAACATGACAATGACCTGTTTTCATTGAATTGCGTAACCTTTAATGCAGGCTGGTCACACATCTTGGCGGTGCTGCTGGCCCGGTTCGCGGAACCCTCGTCGCAAGGTCAATACTGCCAACGTGTTTGATGGCCGACA # Right flank : CCCGCGAAATGACCACATAACCGGGAGATTCAGCGGGGCCGTCACCCGCCTCACAGGAAGAGCAGTAATGACAGGGCCATCACCCCCATGCCGGAGAAGACGCCCAGAATGCACAGGTGGTGCTCGCCATACTCCTCCGCCGACGGGAGCAACTGGTCGAGCGAGATATAGACCATGATGCCCGCCACAGAGGCGAAGAGCAGACCGAACACCATGGGCGTGAAGAAGGGACGCAGCACCACATATCCCACCAGGGCCCCTATCGGTTCGGACACGCCGGAGAGAAAGGAATAGAGGAACGCCTTCCGGCGGTCGCCCGTGGCGTAGTAGATGGGCACGGAGACGGCCATGCCCTCGGGGATATTGTGAATGGCGATGGCGACGGCGATGGCGACGCCAAGCGCCGGGTCGCTCAAGGCTGCCGAAAAGGCGGCCAGCCCCTCCGGGAAGTTGTGGATGCCGATGGCCACGGCCGCCAGCACCCCTGCCCGCTTGAGCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //