Array 1 975-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIVB01000094.1 Vibrio cholerae strain 458_01 NODE_94_length_1005_cov_1.03753_ID_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 974 28 100.0 32 ............................ AGCTGCCTTTACTGCTAATAACGCCTTGTTCT 914 28 100.0 33 ............................ CCACATCGACCACTTGACCTTCGATTTGGTCAA 853 28 100.0 30 ............................ TCCTAGTTTTAGGGTACAGCTCAAAGCCAG 795 28 100.0 32 ............................ ATTGCCCGCATTGCCGACCGCACACTCAACTC 735 28 100.0 32 ............................ CAAAGGTGGCTTTGGCTATTTGTTCCCTGAGT 675 28 100.0 32 ............................ ACCAAGACCCTAGCGCGCTTATCGTACCTAAA 615 28 100.0 32 ............................ TTTACGCGCGTAAAAACAATACTCAGTATCGG 555 28 100.0 32 ............................ GACGGTTCGACGCTGTATCAATCACCATGTAA 495 28 100.0 32 ............................ TTAAAAGAGGCACTGAACGCGTCATATGGTAA 435 28 100.0 32 ............................ TTTAACACAAGGAGATCTAAACATAAGAAAAG 375 28 100.0 33 ............................ GCTAACTTTTGTGCCTCTTCGCTTTTACGACCA 314 28 100.0 30 ............................ ATAGAAAATAGATGCTGATAAAGCAGGTAT 256 28 100.0 31 ............................ ACAATTTCAGTCATCGAGCGCCTTGAGCTAC 197 28 100.0 32 ............................ ACTTGGCGCTGTAAGCTCGTCAAGTACTCTCC 137 28 100.0 33 ............................ GTCCAGCCAGACGAAGCGCGCGGCCAAACACTT 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCATCGCCACCCTGAAAGGGGAAGCCGCAG # Right flank : AAGCTTTTCTCATCCAGACGAGAAAGCCTGTCTGTTCACTGCCGTACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 41-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIVB01000036.1 Vibrio cholerae strain 458_01 NODE_36_length_30226_cov_43.2096_ID_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41 28 100.0 33 ............................ GCGTTAAAAGCGTTTCTTCTGCCAGTAGTTATT 102 28 100.0 32 ............................ AGACTGCGCCCACTCTTCCTGTACGTCGTATA 162 28 100.0 32 ............................ AAAAGTTCACGGCAAACTTCTATCGACAGTGT 222 28 100.0 32 ............................ TCTTCAACTTGACACACAGGTTCATCAGTGAA 282 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 342 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTAGAAAAATCTCACTGGTCATCATGGCTTTTTCTTTGTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15139-15347 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIVB01000046.1 Vibrio cholerae strain 458_01 NODE_46_length_15385_cov_41.8819_ID_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15139 28 100.0 33 ............................ TTGAGTGTCAGTCAGCGCTTTCTTACTTATCAA 15200 28 100.0 32 ............................ GCTCAGGCCAAGCTGTACGACAAAGCGGACAA 15260 28 100.0 32 ............................ GGCATTGGCGCGGGTGTTCATGACTTGCTGGT 15320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : TACTCGCTGTCTTTATTGCCCTTTTTCTCTATGTTCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //