Array 1 44467-47076 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWH01000010.1 Vibrio sp. V30_P3S12P165 scaffold25_size47359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44467 28 100.0 32 ............................ CTTTGTCCCATTCTTTGACCGTTCTCACACTT 44527 28 100.0 32 ............................ TTTTTTTAATTACATGCTGGTTATATATTTAT 44587 28 100.0 32 ............................ GGTTCCGGCTGTGTCGTTGGTTTTGAGTTTTT 44647 28 100.0 33 ............................ CCGTATTACTACACGGGGATGCATTGCTATGCA 44708 28 100.0 32 ............................ TTTGTGGGCGGTGCCGATTGATGAAAGCGCCG 44768 28 100.0 32 ............................ TCACGGGCCAAGGCATTGGCCACGGTGTCCTT 44828 28 100.0 32 ............................ GTATAGTAATACGGGGTGAAAGTCCCCACCCC 44888 28 100.0 32 ............................ GACTAGATAAATTAACGGCATCGTGAGAATCC 44948 28 100.0 32 ............................ AGTAATGCTAGTTGCTCATTTTTACGAATTAC 45008 28 100.0 32 ............................ TAAGTCATGAGCAATTTGTTTGTATTGAACAT 45068 28 100.0 32 ............................ CATCATCATCAGTACGTGTAGTATGACCAGTG 45128 28 100.0 32 ............................ TCGCTAAAAGCAGAGCATCAACAATAGTATTT 45188 28 100.0 32 ............................ AGGCACTGGAAAATCATTGAATGCAATAAAAT 45248 28 100.0 32 ............................ GAGACGTCGAAGAACTACCACCGCCCTCAAAC 45308 28 100.0 32 ............................ GTGATGCTTAGGAAAGAGAATCGCTTAACAAG 45368 28 100.0 32 ............................ GCCGGCACCATTGACGGCTGGGAAAAATTGTC 45428 28 100.0 32 ............................ CGATGGCGGCGATGTTCAGCTCTTTATCGAGC 45488 28 100.0 33 ............................ TTTGGACGTTCTTCTAAATTCTGATTCTTATTT 45549 28 100.0 32 ............................ TAGCAATGGATAAAGCGAAAAGCTACGAAGCG 45609 28 100.0 32 ............................ TCCAAATCAACATGACAATTGTCATAGTAAGC 45669 28 100.0 32 ............................ TTGTTCGGCATCACGCATTAGCGTAGCTAAAC 45729 28 100.0 32 ............................ GCTGTGCTTGTAAATGCCGTAGGGCCGCGAAC 45789 28 100.0 32 ............................ ATAATGGTTAGCCGTTCATTACACGGATAATT 45849 28 100.0 32 ............................ GTGCCGACTCAGGTGGAGCTGTTGGAGTCGGA 45909 28 100.0 32 ............................ GCATCATGCAGCAATGCCGCCCAGCGGTGTTT 45969 28 100.0 32 ............................ CTGCGCGGTGCGTTTGAGCAGGATGGGGAAAC 46029 28 100.0 32 ............................ GCCTGAGTTATGCTCGACCGCTTTGCGATAGC 46089 28 100.0 32 ............................ TTTTGAGCGCATACCGCAAAAAATACCCGCAA 46149 28 100.0 32 ............................ GTGACGGACAATATCTTTGGCAGCATTTTTTT 46209 28 100.0 32 ............................ CCGCCTTTGTTCAGCACATACTTGAGTGATCT 46269 28 100.0 32 ............................ TGTTGCTCCTTGTCTCGCCTGGTTAACAACAA 46329 28 100.0 32 ............................ AATTTTAGGTACTTTATCTAACGCTTTACGTA 46389 28 100.0 32 ............................ ATCGAAGAACCTTCCCATCGCCCACCTTGAAC 46449 28 100.0 32 ............................ TTTTTTATCAGGCACAGCGGCTTTTGGGATTT 46509 28 100.0 32 ............................ TGGTACTGGCTCGCTGCCGTTCGGCGTCAGAC 46569 28 100.0 32 ............................ TATCAGGAATCCCGGTTCCGCCGGGGCGGTGC 46629 28 100.0 32 ............................ AATTGTTAAGCTTAATACGTACAAAATACTCG 46689 28 100.0 32 ............................ TTTTCCACCTTCTGACCGTCCTATTTCGTCTG 46749 28 100.0 32 ............................ TTCACATGCGCGTTCATCGGTATTTGGATCAC 46809 28 100.0 32 ............................ GTATTTTGAACCATCCCAAGAAATAGACCCCA 46869 28 100.0 32 ............................ GTTCCTTGGTGTTGATGCGAGCGATAGGGATA 46929 28 100.0 32 ............................ TTGCAAATAATCAGGTACTTTAATCACTTTTG 46989 28 100.0 32 ............................ TCGATGATCTCTCAAGGTTGGACTGATGAAAC 47049 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCACTGGTGGAATGTCTAGCGGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTGAGATGCAGTCCCAAAGCACATCTCAAGATGGGAGCTTTGATTGCTATGGTTTAAGTAGCAAAGCGAATGGACAATCCGCATTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAATGGGTGGTTTTTTATAAGGTAAAAATGCATTTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : TAACGGTAAGATTTACGGGATACCTTCCAACTGTTCACTGCTGTCACCGATCATGCAAAACTGATCCACTAACGATCATCGAAAACTGATCCACTTGGTATCATCCGTTTATTTTTTATACGGGTGATTTATGTTAACCAAGGAGACATTTGTGGATATTCATGTTCGCTTTGCACAAGGCCAAAGCATTCGTAACATTGCCCGTCAATTAGGCATTTCTCGTAATACCGTAAAACATCATTTGCAGCAGCATCAGATGCCCTCTTACGCGCAACGAGCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3857-405 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWH01000040.1 Vibrio sp. V30_P3S12P165 scaffold26_size38414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3856 32 100.0 34 ................................ AAGTCGGACTACCTAAGTCTAGAACAACCCGCCA 3790 32 100.0 34 ................................ TAACCGGACAGTGACATGAAAAAAAACCAACTCG 3724 32 100.0 35 ................................ AACACGTACCACTGTCGCTGCTCATCATCGATAAC 3657 32 100.0 33 ................................ TGGCCATGTCCCAATGACTTGCGGCTTGTAGCA 3592 32 100.0 33 ................................ CAGATTGGATCGCATCTTGCCCGTAAACCGTTT 3527 32 100.0 34 ................................ AAGCTCAATATCATCAGAAAAGTAATCTGTAGCG 3461 32 100.0 34 ................................ TGTAAAAAAGAGTATGAATTATGGGAAGTCAACT 3395 32 100.0 34 ................................ TTGAACAATCCGCGCTCTGTGGCCAGCTATCCAG 3329 32 100.0 34 ................................ GCTTGCGAGGTGTTTTTTGTGTTCGGAGGGGATG 3263 32 100.0 34 ................................ CAGAAGGCTTTAAGCCTGCCAGCCTAAAGCCATT 3197 32 100.0 34 ................................ TGGGTCGTGAAGGCTCTAACGTTCGGGAAGATTA 3131 32 100.0 34 ................................ TGGTGTTGTTCGCCTGCCGCTATCTAACCCGCCA 3065 32 100.0 34 ................................ ATCTGACGCATCACATCGAGCATCCAGTAAAAGT 2999 32 100.0 34 ................................ TCTGGTGTCGCTATCGTTCAGATCGCACAAATAG 2933 32 100.0 34 ................................ ATTAATTTTAGGCGCAGCAAAGCTTGCGCTCGAT 2867 32 100.0 34 ................................ CAATACCAACTATAAAGCCGTCGAAGTGCTTGTA 2801 32 100.0 33 ................................ ATCTAAGCGTAGGAGCATAGACGATGAATGACC 2736 32 100.0 33 ................................ AGTATCAAGAATCAGCAAATCCAGCGTGATTTT 2671 32 100.0 33 ................................ GCGCTAGGCACGCGCCCAATACCATCGTGCGCC 2606 32 100.0 35 ................................ ATCATCGATTTGATAGACAGTTTCATCCGCTCCAT 2539 32 100.0 33 ................................ TTTGTAACGACGCGCCGCTTGATGAGCGTCATC 2474 32 100.0 35 ................................ ACATGTGCCTAGATCGGCAGGGTGAATAATAAAAT 2407 32 100.0 33 ................................ AAAGAAATGATGCGCTTTTGTTGAAAGGGTTTC 2342 32 100.0 33 ................................ TAGCTCGTTGAAGCTGTAAATTCTGAGGCCACC 2277 32 100.0 34 ................................ TAAAACCAATATAAGGCGTCAGCAAACACCTAAG 2211 32 100.0 34 ................................ CTTTAAACCTAGCCAACCTTTGCCCCTGTTGTAT 2145 32 100.0 33 ................................ CAGCAGTAAGGCTAATAAGGAAATAAGCATGTG 2080 32 100.0 34 ................................ AGCTTGAAAGCCGGAACTCGCTTTGTTGAATCCA 2014 32 100.0 33 ................................ AACAAACTCAAACGCAAGGTGACGCTAAATCAC 1949 32 100.0 34 ................................ AAAACCTTGAGGTTTACTGCTCCGCTTACGATCA 1883 32 100.0 34 ................................ GAATTTGCTGGCCAACATTCACTTTAGGATACAG 1817 32 100.0 34 ................................ TGTTTAAGACGCTGAATTGCAGAAAGTCCATTTA 1751 32 100.0 33 ................................ CCAAGATGCTGGCTGTACAAGCGAGTTCATTTC 1686 32 100.0 34 ................................ TCAAACAACGCAAGAGTCCAAGTTCGTTTAGCAT 1620 32 100.0 33 ................................ TTCAGATCACGCTCAAGATAGTAATCGCACTCA 1555 32 100.0 34 ................................ AATCGTGACCACATAACGCCACTGCTTGTCTGGG 1489 32 100.0 35 ................................ AAACCCCAAGAACCGGTACAAGACTGGTGCAAATT 1422 32 100.0 34 ................................ AAGGCCAAGTTTGCGCGCCGCGTTTTCAACGCGT 1356 32 100.0 33 ................................ CTTTGACTAGGTTGGTTAGTAGCCCTTCGGTAG 1291 32 100.0 33 ................................ TCTAGCGCTTCGCCACTGAAATAGTACGTTGCG 1226 32 100.0 34 ................................ ACTTGCTCGCCATTCGATGTCCACACCTGGAATC 1160 32 100.0 34 ................................ TAATAATGCCGTTGAATTGCTTGAAATAAAACTC 1094 32 100.0 34 ................................ TCGACTATTAAGTTGATTATAAAAGAGATAATTA 1028 32 100.0 33 ................................ TTGCAGCAATTTACCCGTTTCTGCCTGAGCTTT 963 32 100.0 33 ................................ ACAGGATCGAGCGGCAGTATCAGAGTTAGCGCA 898 32 100.0 33 ................................ CATCTGGCTCTCCGGAGCAGGGATTGCGTGTGA 833 32 100.0 36 ................................ ACGCTCTCTAGCTCGCTCTAAACGCCAGCCCAGTAA 765 32 100.0 34 ................................ TCGACTTGCAGCTGGCGAATAGTCCAGTAGCCCC 699 32 100.0 34 ................................ TCAACACGAGCACGTTTTGAAGATGAATGGAATC 633 32 100.0 33 ................................ AGCAGAGCCAGGCAACGCGAGAGCAAGAAAGCA 568 32 100.0 34 ................................ ACCCCAACCGCGCTGCTAACCAGCTTTTGCTGCC 502 32 100.0 34 ................................ ATCCTCAGCGACGGTCAGGCCGTCAGTGTGGTGT 436 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 53 32 100.0 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTTTTGGTCACCTACGATGTATCCTTCGCCAGTGATGATGGGCAAAAACGCCTCAGGCAGTTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGCCTTGGGTTCTCAGTAAAACACTGGGGATCTAGCGATGGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTCACTCAAAATAGTTTTCTTCTACCCAACAAAGTTAGCGGCAAACCATAATATATGCTAGTTTACACGTGCCTTTCACAATAGGCG # Right flank : CGCGCTTTATTGTCAACTTGCAGATCAACCAAACTGTCAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAACGATCAATCAAAATTGATCCACCCTTTTACTCAGGTATTGCTCCTGAGCGTCGTTTATCTTTCAATCGATAACTATCACCACTTAACTGCAAAACATGCGAGTGGTGAAGCAGTCGATCTAACATCGCTGCCGTTAATGTCGCATCATCGGCAAATGCGCTAGGCCATTGGCCAAACGATAAATTGCTGGTCAAAATAATACTGCCATACTCATAGCGCTTAGCGATCACATTAAAAAATAGGTTGGCTTCTTCTCGCCCAAACGGCAGGTAACCGATTTCATCAATGATCAATAACCTTGGAGCCATCACAGAGCGAGAGAGGTATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 352-1102 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWH01000014.1 Vibrio sp. V30_P3S12P165 scaffold64_size4832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 352 28 100.0 32 ............................ AGTGTAATAAATATCATTTATATCATACAAAC GA,A [355,358] 415 28 100.0 32 ............................ GTTAATAGTGTTACAACAAGTCACCCTTGAAC 475 28 100.0 32 ............................ GTCGTGGTTTGACAATAAAGAGGTTTTACAAA 535 28 100.0 32 ............................ ACTTATGCCCGTTAGCTCTAGAGATCCAGAAC 595 28 100.0 32 ............................ AATGTTGCTGATTAGACCGAAGTGATCAACCA 655 28 100.0 32 ............................ TTTGAAAAGTCGTACAAGACAAAAATCCCTAC 715 28 100.0 32 ............................ AACGGGGCAAGCAATATCGCCTCAACAAATAC 775 28 100.0 32 ............................ GCATCTGCTTTGCTTGCAAAAGAAGTCATTCA 835 28 100.0 32 ............................ GAGAAATGATGATGTACGGCTATCAAGCGTTA 895 28 100.0 32 ............................ ACGCTTTTCGCCTGAACTCTATCCAGGTGGGC 955 28 100.0 32 ............................ GGGCTGGATTCAAAGCTGCGGCTCAAGCGTTT 1015 28 100.0 32 ............................ GTTGAACATTCCAACGGCTGGCATCTCAACCG 1075 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTCTGTGATGGCTCCAAGGTTATTGATCATTGATGAAATCGGTTACCTGCCGTTTGGGCGAGAAGAAGCCAACCTATTTTTTAATGTGATCGCTAAGCGCTATGAGTATGGCAGTATTATTTTGACCAGCAATTTATCGTTTGGCCAATGGCCTAGCGCATTTGCCGATGATGCGACATTAACGGCAGCGATGTTAGATCGACTGCTTCACCACTCGCATGTTTTGCAGTTAAGTGGTGATAGTTATCGATTGAAAGATAAACGACGCTCAGGAGCAATACCTGAGTAAAAGGGTGGATCAATTTTGATTGATCGTTTTTAAGCTAAAAGTGGATCAGTTTTCGGTGATCG # Right flank : AGCGAGTGATCGGCTCTTCTTATGTTACCGTTCGTTCATTGTGTTAACGATCACCGAAAACTGATCCACTTTTAGCTTATAAATAGCTTAAAAAGTTCGCGCTTTATCGCGTCGTTCTAAGATAAACTGCAACATTCATTCATCAATCAAGGAGAAAATTTGATGAAAGCGATTATCTTGATATGTATCACCATAAGTTCTTTTTTAACCTTACCCGCTTATGCCGTTGAATTTTGGCATTCCAATACGGTTTGGGCCGGTCAAGGACAATGTTCGGCTGTCTTTTCATTTGATAGTGAAATGAATGAAATAATCGATCTTCAGCTTTCAGTTTCTGCTTTTAATCAGGTCGGTGAAGAAGTTGCATCGGGGGTTATTGAAATTGCACACTTTGGCCAATCATCAGCTGATCGTTATATCGACGCATACTTAGAGAGCGAGGCTTTTTGTGATGAACAACTAACCATCTTAGTTAAGGATGCTCAAGCCATCGTAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2158-3627 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWH01000034.1 Vibrio sp. V30_P3S12P165 scaffold69_size3870, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2158 28 100.0 32 ............................ ATTAATAATTTGAGTGGAACCGTAAACGTTAT 2218 28 100.0 32 ............................ ACTCGAAAAAGGTGATTCTTATTATCCCGCGG 2278 28 100.0 32 ............................ AGAATGCAAACGGCTTATGAGAATGAGCGCAG 2338 28 100.0 32 ............................ TTGGACACCAACAAAAAAAATGCTGCCAAAGA 2398 28 100.0 32 ............................ TGTTGATTTCGGAACACGTCCTAAATCATTGT 2458 28 100.0 32 ............................ TTACTTAACTCGATGTGAAACGCTTCCTTTCT 2518 28 100.0 32 ............................ TGAGTCTGAATGGCTCAGAACAGGTCGCTACA 2578 28 100.0 32 ............................ TTTAGACGTTCTTTTAAATTCTGATGCTTATT 2638 28 100.0 32 ............................ ATAATGGTTAGCCGTTCATTACACGGATAATT 2698 28 100.0 32 ............................ TTAAAAAAAGACGGCGGCACAAACAACGACCG 2758 28 100.0 34 ............................ CTACACCATCAATTGATTCTAATATTTTTGATGT 2820 28 100.0 32 ............................ TCCAGTTTGAGAACGGACTCCTCTGCTTTATC 2880 28 100.0 32 ............................ TCCAGGTTCACCGATACCTGGACCATTTGATA 2940 28 100.0 32 ............................ TTTTGGCGTAAGTTTTCCGTAAAGTGTTTTCA 3000 28 100.0 32 ............................ GCCGAGAACAACAGCAAGAATAGTAAATCCAG 3060 28 100.0 32 ............................ TCGCCAACGGCTTCCGCTAGCATAAGTATTTG 3120 28 100.0 32 ............................ ATGGCAAAGAACATCTAACATATCAATTCCGA 3180 28 100.0 32 ............................ GTTCAGCTCATGCTCTCGCCCCTCTTGCCGCT 3240 28 100.0 32 ............................ ATATTGACGCTTAGCCCAAAACACAGTCGATA 3300 28 100.0 32 ............................ CCGAAAATCCGCAACGAAATATTGTTGTAGAT 3360 28 100.0 32 ............................ TGAAGAACCGGATTTACCTTTTCCTGAAGAAC 3420 28 100.0 32 ............................ AGTCAGATGACCGTTGCTGACTGAAATCAATT 3480 28 100.0 32 ............................ TCTTGGTGATTTAGATATTAAAAATGAAAAAA 3540 28 100.0 32 ............................ TATTATTTCACCTTTGTTTGATTTTTATCGTT 3600 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATGGAGTTTTGGGCTTGCGCGAGGTTAGCCAGTTTGGTGCAAAGTCGCTTTGGCAGTCTTGCTTTCGCTTTAAGTTTCGCGAATATGTGTTATCAGAATTTATTGGTTTTCAAAGCAAACGAATGGTCACAAAGTTTGAGTCAATTCGGGTTTTAAAACTCAAACGGTTTGTTGGTTTCTCAAATCGAGTTAATCTCAGCTTTGGTAAAACTTAAGGTGCTGAAATTTAAGCTAACAAGCTGCTTAAGTGGGATTCGCAACGCGTGGCATTTTTAGCATGCGGTGAGTTTTGTGATTAAGTTGGTGTGCGGTAGCTTTCGTAGTGCGTTGCTCACCCCTTAGCAGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGTATTTTAAGTTATTGATTTATATAAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAAGATGTTACTGATAAAGTTTCATA # Right flank : GTGTCACCGATCATGCAAAACTGATCCACTAACGATCATCGAAAACTGATCCACTTGGTATCATCCGTTTATTTTTTATACGGGTGATTTATGTTAACCAAGGAGACATTTGTGGATATTCATGTTCGCTTTGCACAAGGCCAAAGCATTCGTAACATTGCCCGTCAATTAGGCATTTCTCGTAATACCGTAAAACATCATTTGCAGCAGCATCAGATGCCCTCTTACGCGCAACGAGCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1369-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWH01000033.1 Vibrio sp. V30_P3S12P165 scaffold73_size2790, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1368 28 100.0 32 ............................ TTTTTCCTGCAATGCTCTAAGTGAATTTAATT 1308 28 100.0 32 ............................ TATAGAAAAAAAACCCAATAATAGAGATGCAA 1248 28 100.0 32 ............................ GACATGTACAGCAATTTGAGCAACACGCAAAG 1188 28 100.0 32 ............................ TAGCCGATTTTGCTTTTTTGCTATGTGTTCCC 1128 28 100.0 32 ............................ TTTTCACTAATCGCTCTCGCGCTTTTGTACAT 1068 28 100.0 32 ............................ GGTGAAAGTCCCCACCCCGTATTCTCTATTTA 1008 28 100.0 32 ............................ TTTACTTGTCTGAAGTGACAACACGCTATGAG 948 28 100.0 33 ............................ TGGTGAAGCGCTGACGATAGGTCGGCGATACTT 887 28 100.0 32 ............................ TGGAGCTGTTTTCCGTGCTTCGTATGGATGTA 827 28 100.0 32 ............................ TTAGCCATAAACGTCCTTACTGCTTGTTACTC 767 28 100.0 32 ............................ AAATCAGCATATTGCGGATAGTTAAACGTGAC 707 28 100.0 32 ............................ TGAGTATATTTCCGGTGATTTCTTAAAAGGTC 647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGTTAGTTTCTGGATCGGTTATTCATTCCAAAGCTAAGTGGCAACGGGTTGTTGTCTTGCTCTCATTTATTCTCGTACTAGGTCTAGTTCCAAGCTTAGTTGTGTTGGCTCTGATTCTTATCGACGGTGGTGTCTCAAGTTTCTTGGTGAAGACACAGCTCGTGCTTTTCTCGTTGGCATCCGTGGTCTTCTTTTGGGTGGGTTCAGCTGCACACGAGATGATAGAAGAGGGTTAACAATCTGTTTAAGAGTGATTCGCAACGCTTGGCATTTTTGCTATGCGTTGCGTTTAGTGTTTAAGGTGGTATGCGGGAGCTTCGGTATTGCGTTGCTCACACCTTAACAGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATATTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAGTAAGTTACTGCTAGAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTGGGATCGACCAGTTAACAAGGCATTTAAGAGGGACAGTCAACGTGTGGCAGTTTTGGTTTGGTTGAGCATTTGAGGTTACGGCTGGTTAATTTGAGCGCAGTGGTTTGCGTTGCCTGCCCCTTAATGCGGCGTTATGTAACCGTAGAGAAAAAGCCCACAATACATTGAAAAGTGGATGTTTTTTATGATTGTTCTAATTTCAATTTCAATTTCGACTTTCTCTGAGGTAGTTTCGTGCATTTTGATTTAGCTTTCGGCTTCTTTATTCTTCGAATTTTCAGTTTGTTGTTAATGATTCAGTGGGTTTGCGATAAGTTTGGTGGCAGTCATTTTTTTCTTTGAACTAGGGCTCGCAGTTTCATCGTTGCCACGCAAATTCTACTGGGTTACTGCTAACTTTTCATGTAAGTTAAACGATATTTGGCAATGCTGTTCTTTGTAATGCTTTGAAATGGTTAGCAAAGTTACATAACAAAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73640-73082 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWH01000037.1 Vibrio sp. V30_P3S12P165 scaffold17_size74155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 73639 32 100.0 33 ................................ TGTAAGTGGACTGGCGATTTAGGAGATAAAATG 73574 32 100.0 34 ................................ TGGTGCAAGCGATGGGCAAAAAGCCGTTGATAAG 73508 32 96.9 34 ............T................... CTTCAACCCAATGCCTCCTCTATCATTTTGATTG 73442 32 100.0 35 ................................ CTCTGCAGAAACATCCCAAGCCACAGACATTTTTG 73375 32 100.0 34 ................................ CCCAAACTGATGCAAGACCTTGACGGCGGAGTGA 73309 32 100.0 34 ................................ AATTGTCTGTTGTATTAGCCTGCCGTTTTCGTAG 73243 32 100.0 33 ................................ AATTGTGGGCTGTGAACTATCCCACTTGAATCC 73178 32 100.0 33 ................................ GCATACTCACTGATTTGCCATTTTCCGTTTCTG 73113 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.3 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : GGCCGTTTACCGCGCCGAATGGTGGTAAAGTCGATTTGCATTTGCTGTCCTGGCAGGGTTTCAAAACGGACAACCGGCTCAGGAGTGGAACAAAGTTTAAACTGACACACAAAGCGACGGAGCTGAGCAATACCGCCTTGATAGCCGAGTTGAACCACCTCATCAAATAAGACGGTAGCAGGTATCCAATCAGGTTGGGCCTGCTCAATTCGTTGAACCAGATAAGGCTTAAAGGGCTCTAGTTTTGTCACGGGTTTTGCTCGTTGCGCGTAAGAGGGCATCTGATGCTGCTGCAAATGACGTTTTACGGTGTTACGAGAGATGCCTAATTGACGGGCAATGTTACGAATGCTTTGGCCTTGTGCAAAGCGAACATGAATATCCACAAATGTCTCCTTGGTTAACATAAATCACCCGTATAAAAAATAAACGGATGATACCAAGTGGATCAGTTTTCGATGATCGTTAGTGGATCAGTTTTGCATGATCGGTGACAAACT # Right flank : CCGCTCCGCGGGGGTAACTGGAATAATGGCTCGGGTCGCGCCTCCTACAGGTGTAAGATTTGATCGATGACGTGGCGGTTTTCCTCATGGCAATTTTGTGATGAGCGATTTTTTTGTCAATATAGTCACTTAAATCATGTTTTTATCGACTATATTAGAATTGGTTGTTATCCTGTAACGCTTCACATGGCGGTTAATATCATTAGGTGTGGGGCGATGGGATCACTGTTGGAAGTGAAGCAACTGGGTACGTATAGCCAACAAGGTTGGCAAGCATTAGTTACTGCGTCGTTTGAGGTTGATAAAAATGAATGTATCGCAGTTATTGGGCCGAACGGCAGTGGTAAATCGAGCTTACTTAAGTCGATTACTGGTGAATATTTGGCTGTTCAGGGTGAGTTACGTATTGATGGCCATAAACTGAGCGACTTATCTCTCCAACAAAAATCCAAATTAATTGCTGTAGTCGCACAAAATGATTACGTCGATCCTCGTTTAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //