Array 1 29482-29215 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVV01000001.1 Erwinia endophytica strain A41C3 Seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29481 28 100.0 32 ............................ CTGATGGAACACGCCGGATTGAGCCGCGAACA 29421 28 100.0 32 ............................ ACGACATCTACAGTCCGTGCGTGAGAGTTTGC 29361 28 100.0 32 ............................ ATCCACAATGTGGCTCTTACTCACCCCGGAAC 29301 28 100.0 32 ............................ AATCAAAAAAAGCGTGGAGGGATTCGTGTTCT 29241 27 82.1 0 ..............C.....GC.-...G | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCTGCGTCATATGGGCTGGTTCGAAGTCGCTGGCCTGATTGTTAAAGGAATGGAAGGGGCTATTGCCGCCAAGACCGTAACCTATGACTTTGAACGTCTGATGGATGGCGCTAAGTTTATTAAATATCAATTGGTTAGTTGTGCTGCCATCAAGAATATGTACGTTGCATATTGCAGAGGATGTTTAGGGGGATATGTTCTCGTTTTTATTCCTGTCTGAAAACCAACTTTTCTGCAAAGTAGGACATAATATGACCACATTATTTTACCTCCCGATAATCTTTCATCCTTCACCTCGACCATCATGGCAACGCTCTGCTTGATCTTACCCAGTAACAGTGCATCGCCATTTGAAAACCTTATTTTTAACCCTTTTTTTTGGGGCCACTCTAACCATTTGATTTTATTGTGATGTTAGAATGCTGTTGGAAAAAGGGTATTTGATGAAGAAGGGTATTTTTTTATAGAAAATACAGCAGAATATGTTATTTTTAGTCCT # Right flank : GCATTTGTAGATCAACCCGTGGAATTCCATTACGGCAATGTTGAGTTAAATCATTTTCACGCGACTATCACCCTGCGCGTCAAGACCATCGCTTACTACAGCGTTATTCGATAGTGAAAAAATCAACCATTTTGTTTAAATTAGATTTAATACAGACGTGAAAATCGCTGGGTAAAATAGCGCTGATGACATAGTTAAGCACAATATCCCGGTGTAGAGGCATGGGGATGTCATATTAAAAATATGTATTGAAAATCCCCCTGTCTTTCCAGTAATACTGGAAAGATTTAAATTATAGCCTGCTACAGGAAATAGATTACCCATACCATCAGCGCTATTATTGCCCATGTCAGTCCAGAACCGGCGATAACCATTAACCAGGCTTTCCGTTTGGTATGGCTGGTGCCGTTATAACGGATAATATTTTTTGATTGTATTGCGATGTTTTTCATAGTGGTTCTGCCATTTAGACGTGTAGTGTGTTCTTTCGTACAGAGCAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 185315-186197 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVV01000057.1 Erwinia endophytica strain A41C3 Seq58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185315 29 100.0 32 ............................. CTCGGCGGGACTGGGAAGACTCGCCAACATTC 185376 29 100.0 32 ............................. CCTGGCAGAGTCGCGAGTTCAGCCGCGCCATT 185437 29 100.0 32 ............................. CCAACACCGAACGCATAAGCCACTTTATTCAC 185498 29 100.0 32 ............................. GGTTATTTAGGCAAAAGAAAAGGCCGGAAATC 185559 29 100.0 32 ............................. GTCGTTGTCATCAGCCTTAATCGGAGGGCGGT 185620 29 100.0 32 ............................. AAATTGCCGGAGTTAGCCGGGCGTGGACGTAT 185681 29 100.0 32 ............................. CCACCGAGGGTTAAAATAGGAAGAGAACGACT 185742 29 100.0 32 ............................. GGCGCATGTTCGCGAGTGGCCGTTATCTTACC 185803 29 100.0 32 ............................. TTAGTCCCGTCACGTTTCCATCTAACGACGAA 185864 29 96.6 32 ............................A TGCGTAATTGTTATTCACGCGCACCCGCAGGG 185925 29 100.0 32 ............................. CGAGAAAAAGCGGCTCTCTGTCTGCTGAAACA 185986 29 100.0 32 ............................. CCTCAGATCGGTCTCCAGGCTGGATATGCGAC 186047 29 96.6 32 ............T................ ATATTTATTCAGCCAATGCGGCCACGCTTTTG 186108 29 100.0 32 ............................. GGTTTTCGGTTGTTGTGGTGCTCGATAATACC 186169 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAATCGAAGAGGTACTCGCGGCAGGGGGGATATCGCCGCCGCCACCACCTGCAGATGCGCAGCCTGTTGCCATTCCTGAACCTGCGCCTTTTGGTGATTCAGGTCACCGGAGTGCATGAGTATGAGCATGCTAATGGTAGTGACTGAAAACGTTCCTCCTCGTTTGCGAGGGCGATTGGCCGTTTGGTTGCTGGAGGTGCGGGCTGGAGTTTATGTTGGAGATGTTTCGCGGCGTAGCAGGGAAATGATCTGGCAGCAGATCACTTCCCTGTCAGAGTCAGGCAATGTCGTTATGGCCTGGGCAAGTAATAATGAATCTGGTTTTGAGTTTCAGACATTAGGGGAAAACCGACGTTTGCCGGTGGAAATGGATGGCATCAGATTAGTATCTTTTAGTCCCATTAATAATCAATAAGTTAGCGATCTTTAAAAATCAGGAAAAATCGGTAGAATTTATGTCGTTATAAAAAGCATTATAGATCAGTGATATATATTTAGA # Right flank : GCGTTTTTAGCTAATTCATCACGTAAATCGACAGCGTTCCCCACACCAGGAACAGGCTGGCGGATGCTCTCTGTTATTGCGGTAACCGGCGAAAGTTAAACCAGAGACGGATTATGAGCCGTTTGATGTTTTGGGGTTTTGCGTACCTGATAGCGCGTAGTGAATCACCCTCACTCACCGGGAGGTATTTCCCACTGGAAATAGCGTCAGGTTATGCTTTGCCTCTGCGCTGGGGCCTGGCGGCGAAATAATGTTGCTTTTTTGTAAACGGATTAACATGGCGAGGAAATCCTGCTATGCTGGCCCACGCGGAACCGGGCGCTTTACCCTACAGCATGAGCACATCACGTCACACTGAACCAGAGGGCGCCTGGTAAGCCAATACAATGTGAGCGAGGAGAACGTCGTGCTAGAAGAATACCGTAAGCACGTTGCCGAGCGTGCAGCCCAGGGGATCGTTCCTAAACCATTAGATGCTTCCCAAATGGCCGCGCTGGTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //