Array 1 68684-69188 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBP01000071.1 Campylobacter concisus strain AAUH-16UCdp3 1099779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 68684 29 96.6 49 ......T...................... TTTGCACTTTGTTTTTTGTTGATTGAAAACATCATATATACATTTAAAT 68762 29 100.0 74 ............................. TCTTTGACTTCAACCTCAAATAGTTCTGCTACTTCAAAGGTTACGTTAGCTGCTACTATTTTTTATATTTAAAC 68865 29 96.6 42 ..C.......................... AGAGATCTTTCGATACGATCACCATTCATTTCGAATTTAAAC 68936 29 93.1 46 ..............TT............. GGCTTTACGCCTTTCTCGGCTTTATGACCTCTGATGTTATTTAAAC 69011 29 89.7 47 ............C.AT............. TTCATCTCTGCCATGTCGAGTAGTTTCCATCCGACATAAATTTAAAC 69087 29 96.6 43 ........................A.... GCATCATAGTGAAGCATACTCTCGTTGAAGTCATCATTTAAAC 69159 29 69.0 0 ..C.C.......C..C........AGCGA | A [69182] ========== ====== ====== ====== ============================= ========================================================================== ================== 7 29 91.7 50 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TAGTGCATACCCAAAGGCTCCTCGCACCTGTGAGCCGATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATATCTCATCTAAACTCCTTAACTTCGCATAGTCTAAAACCGCGCCTACCATGCTCTTTTTTAGTCCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCACGCCAAGACTATCTCTTACTGCCCTTATATCGCTAGAAAAGGTCAAAATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATCATTATTTTTGTATATTTTGCTTACCTTTATCACTCTTAGTTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTCGTGATTTTAAAGATATTTAAGATAGGTTCTTTTACTTATTATTGTT # Right flank : ACCCATACCACACTTAAAAGGTAAATTCAAAATGTTTACTAAAAATCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCCGCATTTGACGAAATTTCTGTAAATTCTTTGGGTTTAGACGAGATCTCGTATGCTGATTTTAAGAAGAACTTTGACGAAAACGCAGACCATCTCATAAGCTCATTATTAAATGGCACCTATACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTTAGTCCATACTTCGACGAGACGTTTTTATCAAATTCCTACGCTTACCGCCCACACAAATCCACCTACAAAGCCATAAATAGAGCCAGTAGTTTCATAAATGAAAATGACTGCTGGATACTAAAAGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTACAAATTTTGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:-1.5, 6:0.25, 7:-1.35, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 72173-73104 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBP01000071.1 Campylobacter concisus strain AAUH-16UCdp3 1099779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 72173 37 100.0 38 ..................................... GCCACTTGGCACTTTAATGTACACGTGCTCTATGTCTG 72248 37 100.0 38 ..................................... TTTTGTCTTCCTGTTCGTGGTCTTTCAACCACTTTAAT 72323 37 100.0 41 ..................................... ATTTCCATCAAGTCGCAAACCTCTAAGACTGTGTTAGCTGC 72401 37 100.0 35 ..................................... AAAGATCAAACCACAAATGATCCATTCCATTTGTA 72473 37 100.0 35 ..................................... AAAGATCAAACCACAAATGATCCATTCCATTTGTA 72545 37 100.0 35 ..................................... TATAGGCATGGATATCCTCTGTTTCACGACTCTTG 72617 37 100.0 41 ..................................... AATACCAAGAAAACTACAGCACAAATGATCCATTCCATTTG 72695 37 100.0 34 ..................................... AAGCTAAAGCTTCCTCAGCAGTAGCGCATTTGAC 72766 37 100.0 38 ..................................... AAAGTTAGAAGGTACTTTCACATAGAACACTTTATCGT 72841 37 100.0 38 ..................................... GATACTGTAAAGTCTCCTCAGGAGTGTTGAAACGTTGC 72916 37 100.0 39 ..................................... CTTAATCTGTTTGCGAAGACCTTTCTTCGCTAATATGAG 72992 37 100.0 36 ..................................... TATGCTAGGCATTCCTCAGGAGTGTTGAAACGTTGC 73065 37 97.3 0 ....................................T | C,AA [73095,73097] ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 99.8 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTCGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTATTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCAAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTTGCTAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTTGGTAAAGTTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTAGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTGTAGCCACCAAAGCTTTGACCCACCTTTTGGTGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGCGTTGAATTATTTTGTTTTTACATAGACTACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //