Array 1 181181-183608 **** Predicted by CRISPRDetect 2.4 *** >NZ_OVCS01000010.1 Pseudomonas aeruginosa strain KCRI-309A isolate RDK02_309A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181181 28 100.0 32 ............................ AAATCCTTCTTGAGTACGGCGACCAGTACGGT 181241 28 100.0 32 ............................ GCGAAGTCATACTTCTTATTCACGTCCGTCTG 181301 28 100.0 32 ............................ TGGTCGTGCTTGAGCTCGATTAAAACGGTACC 181361 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 181421 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 181481 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 181541 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 181601 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 181661 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 181721 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 181781 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 181841 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 181901 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 181961 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 182021 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 182081 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 182141 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 182201 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 182261 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 182321 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 182381 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 182441 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 182501 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 182561 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 182621 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 182681 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 182741 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 182801 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 182861 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 182921 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 182981 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 183041 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 183101 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 183161 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 183221 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 183281 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 183341 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 183401 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 183461 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 183521 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 183581 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 193421-192133 **** Predicted by CRISPRDetect 2.4 *** >NZ_OVCS01000010.1 Pseudomonas aeruginosa strain KCRI-309A isolate RDK02_309A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 193420 28 100.0 32 ............................ AGCACTCGCAGCAGCTGGTGGACGCTGAAGCG 193360 28 100.0 32 ............................ AAAAGCGGCATCGCATAACGGACGTTACGTGT 193300 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 193240 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 193180 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 193120 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 193060 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 193000 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 192940 28 100.0 32 ............................ AAGGATTCTGATCTCTTGACTCACCATTTCCT 192880 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 192820 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 192760 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 192700 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 192640 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 192580 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 192520 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 192460 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 192400 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 192340 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 192280 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 192220 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 192160 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //