Array 1 157827-156719 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PITQ01000008.1 Rahnella sp. AA NODE_8_length_292753_cov_38.6951, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    157826	    28	 100.0	    32	............................	CTCATCACAGCGAAGAACCGCAGAGTCTTCAT	
    157766	    28	 100.0	    32	............................	GGCATGCGTCGCCAAGTATCCCCTAAATTATC	
    157706	    28	 100.0	    32	............................	ACTAAATACATGATTGCAGCCTAATCCAGAAA	
    157646	    28	 100.0	    32	............................	AACGATAAGCAGGGGGACTGGTTATTGCCGGT	
    157586	    28	  96.4	    32	...........C................	GCCACCTGGCCGCGCGTGATGCCGAAGTGAGG	
    157526	    28	  96.4	    32	...........C................	ATAGTGAAGCTGGGTATTCGCGAAATCTTCAG	
    157466	    28	  96.4	    32	...........C................	AGGCTTGGTAGTGCGTCGGAATAAGTTTTAAT	
    157406	    28	  96.4	    32	...........C................	ATGATGCGAACGGTCAGCAACTCCGTCATTCC	
    157346	    28	 100.0	    32	............................	CTTGGAGGCTGACCAGGCGGTGCTACGTTAAG	
    157286	    28	 100.0	    32	............................	TGGACAGATAAACCCTAGGTGAATCTCAGACC	
    157226	    28	  96.4	    32	............G...............	TTCATTTTCGGTGCGCAGATGCTTGTTTCCAT	
    157166	    28	 100.0	    32	............................	AGCATTCTAAATGGCACCGCTCGCCGCAAGAT	
    157106	    28	 100.0	    32	............................	GACTGGATACCGCCCAAGCTCAAGCATACACA	
    157046	    28	 100.0	    32	............................	GGGGCCGTTCACTTCTACAATAATTCGGGGTA	
    156986	    28	 100.0	    32	............................	ATATGTAGACGTAAATGACGAAGGAGAATTAG	
    156926	    28	 100.0	    32	............................	GGGAGGCCAGACTCAAAAATCGAGACATTCCC	
    156866	    28	 100.0	    32	............................	TTCTCAACCGGTCACGCGATTTCCTCAAATTT	
    156806	    28	 100.0	    32	............................	ATGAAGAACCGGCGGTGGATTGTCGGCGCACC	
    156746	    28	  78.6	     0	.............T.......CA.A.GC	|                               	
==========	======	======	======	============================	================================	==================
        19	    28	  97.9	    32	GTTCACTGCCGTACAGGCAGCTTAGAAA	                                	       

# Left flank :   CTGCTGACGCTGCATGATAAGAGAATAAAAGAGATTTTAGCGTTTGTGCTGTGTGAACGTTTCGAGATGCTGCGCTGTTCGCTCTATGCCTCAGGCGAGGTGATCCAATGAAAAAGGACTGGCATCAGGCTGATATCATCGCCGCAATTAAAAAGAAAGGCACCACACTGGCCGCAGTATCCCGTGAAGCGGGGTTATGTTCTTCAACGCTGTCGAATGCGCTAACGCGCAAATGGCCAAAAGGCGAACGGCTGATCGCCGAAGCGATTGGCGTGAGAGCCGAAGTGATCTGGCCGAGCCGATACACTGAAATCTAATACCGGCGTCTTTTGAGACAAAAAATGAAGCAAGGCGAAAGGGGGTAAATTTACCCCTTTATTTTTTAGCCTCGCTAACGCATTGATATTACTTAACATATTATCACTGCCATAAAAAAGGGTTTTGGCGCTATAAAGCGCTTAACACATTGTTTTTGATTTGGATCCCGCTATTCTGTAACT
# Right flank :  GGTAATTCCACTTCCCAAAAGGGAAAGGGTTAATTATTTTTTTAACACAATTACTTAACAACAATTCAATCGTGGAAATACAACATAATAAAAACCAACATATTTGAAAGAATGCAGGGCGGGTATATGTTTAAGTGTTGATGTTTCATCCGATTAGGTTACTTTAATTTCTGTGCTTTCCGGACGCCAATAAAAGGAACACCAAATGGCTGAAAGATTAATGCCTGCCGCGATGGCATTTCAGAAGAGGCGTAGTGCGCCATCTTACCAACGCGCAGACGCACTCGATGTAATGATTGATACATTACAAAATACGGCTCAGCAACTTGGGCAGGCCGGCGAATGAATATATTACTGGTCTCTGAATGTAATAAAAAAGCCTTAATCGAAACCCGCAGAATTATCGATCAGTTTGCCGAACGTAAGGGAGAAAGAACCTGGCAGACGGCGATCACTCTTGAAGGGCTTAATACATTACGCCAGATATTGAAAAAGACGGC

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat :   GTTCACTGCCGCACAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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