Array 1 5719-5017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHE01000007.1 Caballeronia grimmiae strain R27 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5718 29 100.0 32 ............................. GGCCGGCGGCCGAGCTGTAGCCGTAGCTCGTC 5657 29 100.0 32 ............................. GCGCTGTGCCGGTCCCTCAAGTGCTCAAGCCG 5596 29 100.0 32 ............................. ATCGAACATGCGGACTCCCGCCTTGCGGAGCG 5535 29 96.6 32 .........................C... GCGATGGCCCATAAGGACCAGTATCGGCTCGG 5474 29 96.6 32 ......................A...... TGCTGCTGTGCATTCATGCGGTCCTTCTCGTG 5413 29 96.6 32 ...........A................. TGGTAAGCCCGATTGATGGCATCACGGAAATC 5352 29 96.6 33 .....T....................... CCTGAACGAGAGGGATGCCGGAACCGGAGGGGG 5290 29 100.0 32 ............................. ACTAGGGCCGCTTGGTCCCGAGACATAGCACC 5229 29 93.1 32 ....T..................T..... GTCAGATAAGCCCCGGGCGGCACTTTCGCGTA 5168 29 100.0 32 ............................. TGAAGAAGTGCGGCGGCTTCACGAGACATGAC 5107 29 93.1 32 .......................TC.... CAAGTGGAAGCCGTCAAGGAGACGGTCAAGCC 5046 29 75.9 0 .........A.A...C..A..CC..C... | C [5044] ========== ====== ====== ====== ============================= ================================= ================== 12 29 95.7 32 GGTTCCTCCGCGTGCGCGGAGATAGACCC # Left flank : GACCGGCTCGTTCGACGCGAGGCGGCGCGCGTGTTTCGCAAGCAGCAGATCATTCCCGCGATGATCGATCGCATCAAGCAGGTGTTGCGGCTCGAGGAAAAGCTGGAGGAGGCGGATGGCGCTGGTCGTGGTGGTGACGCGTGACGTGGCCGACAGGTTTCGCGGGTACTTGGCGTCGGTGATGCTGGAGGTGTCGACGGGCGTGTACGTCGCGCCACGGATGAACAAGGGCGTGCGCGAGCGGACGTGGTCGGTGCTGGCTGACTGGCATGGACACGAACCGAGGGGCAGCATCGTGATGGTGTGGCGGGAACTGGACGCCGTCGGTGGCGTTGGTATCGCGCAATTGGGCGCGCCGGTGAGGGAACTGGTGGATGCGGACGGGATGTATCTGGTTAGACGCGGGTTGAGGTAGGCGGTTGGCGTTCTTCAAAAATTAGCGATTCTTGGTGGATCGGGTGGCGGGTTTCGGGGTTGGTTTCATGGGGTTATGTGGGAGA # Right flank : TTCGTCGTCTGATTTGTATCAGCCGATACTGGACCGGACAGACAGTGACCGATGCATCGCCGTCTGTTTCGTCCCTCGTGGCATCACTTCTTGAAGTCTCATGGGCTTCCCTGGCCGGCTAAAAGCAGCTTGCAAGAAAGGGGGGCGACCGAGACTGAACAAGAAGTCATCGGACGTTGTCTGTCGAGTCAAATCCTGCTGGCTACATCTGATTCGCTCCATCGCTGATCCCGATTCCCCCAACCGCACCGCAACAGCCCCAACCTCACCACAACCGCAAGCAAAAGCGACCAATCCACGCCCTCAAAAAGTCGCTCTCAACCAACCCCGCGTCGCATTCCCCCCATCGAACGCCGCTGAAACCCCCTACTCTCCCTTCAGGGCCGCGAGCATCGCACGCAGAGAGAAAGCCCGCGCCTGCCGTTCACGAATCCAAGGAGACGTATCAATGAGCACCAATCGCGGCGTCGTATATCTCGGTCAGGGCAAGGTCGAGGTCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 14907-16826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHE01000007.1 Caballeronia grimmiae strain R27 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14907 29 100.0 32 ............................. CTGTACGCGGAGCAATACCACGTGACACTTCG 14968 29 100.0 32 ............................. CGCCGACACGGCGGCCCATAGATGCGCGAGGA 15029 29 96.6 32 ............................T TGCGCCAGACGAAACAGGCGTCAGCTGATGCG 15090 29 100.0 32 ............................. CGGAGACAAAATACCGGACTCGGTTCGTTGAG 15151 29 100.0 32 ............................. GTGTGGGCCAGCTTGCCCGGCGCCGGGTACGG 15212 29 100.0 32 ............................. TTCAGACTATCGCCTGAAGGCAAGGTATGCGC 15273 29 100.0 32 ............................. ATCGCGGGCGGCATCGCTTCGAGCCTTCGCTG 15334 29 100.0 32 ............................. AGCGCGGTTCCTACGCTGCGATCGCCTATCGC 15395 29 100.0 32 ............................. GAATATCATGCGCTGTGCGTTCTCGGCAAACG 15456 29 96.6 32 ............................G TCTTCAATCCATACGTCATCACGATACGGGTA 15517 29 100.0 32 ............................. ATTGCGCTACCCACTGCGGTGACTGCGCTACC 15578 29 100.0 32 ............................. ATGACGAGCTTTGGCGACAACCGGAACGTCAA 15639 29 96.6 32 ............................T CAATGAGGCGCTCACATCGTGCGCAGCCGCAT 15700 29 100.0 32 ............................. CAGCATCCGCATGCCGCGCACCGCCAAACGTC 15761 29 100.0 32 ............................. CTCGCCGAGCGCAATGAATCCGCTCCCTTCCA 15822 29 96.6 32 ............................T TGGTGGGTGATCGGTTCTAGATGTACTGGTAA 15883 29 100.0 32 ............................. GAAACGGGCGCTAGCGGAGCATGGCGCGTACC 15944 29 100.0 32 ............................. CCGGCAAGCGGATTGGAGTCGAGGATTTCGTC 16005 29 100.0 32 ............................. TTCGAGACGAAGGGCAAGTGGGGGCAACAGCT 16066 29 100.0 32 ............................. AGCACGGGGGTCACGATGACGCTCACGTGTCA 16127 29 100.0 32 ............................. GGGACGCCCGCGCGCTATCCCACTTACGCGGC 16188 29 100.0 32 ............................. CAATCCTCTTCAGTTTCCCCGTCGACGTCGGC 16249 29 100.0 32 ............................. AAGACCCGTCCAGTGCGCCCGCGAGGCGGCTA 16310 29 100.0 32 ............................. TGAGGCTCTGCCGCGTCGATAGTCGTGCGCAT 16371 29 100.0 32 ............................. CAGCGGGTAGTTGCCCACCTGCCACGGTAGCC 16432 29 100.0 32 ............................. CGGAGGAGGTCCCCGCCCATTTCCGTAAAGTC 16493 29 96.6 32 ............................G CGGGCGGTCTCAATGAAATCTGCCGCGACAAG 16554 29 100.0 32 ............................. GGGCGAGCCACTCTCGGGAAAATCGAATGTCA 16615 29 96.6 32 .....T....................... AACGGCGGACCGGCGTTTCCTGCTATGGATGG 16676 29 100.0 32 ............................. GCCACGCGCTTTCTAATCGATCAGGTGCTGGC 16737 29 100.0 32 ............................. AAAGTGAATAAATCGTTTGTACTGCGTACTTG 16798 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.3 32 GGTTCCTCCGCATGCGCGGAGATAGACCC # Left flank : GCTCGACCGGCAACGGTCTGGAAGGCATGGCGCAAGCGCGTGCGTTCTTTGACGGCTTCGATGAAACAGGCGGCGACGTCCAGCATGTGGTCGCCGAGGGGATGCATGGTCTCGCGGCCACAGTCGCTGGTACGCAGCTTTCCCCAAGCCTGTAGTTGATGCGCTACCGTTTCCATTGTTGCGTCGTGTGGTCTGGATGCCGAGTTTTTTGCCTAAATCATTTACTTCGCTATGCTTAGATTATCACTAGGATCGATCGTTTGACGGCGGTTCGAGTGTCAAAGTTGATCAATGATAATGAGCAGGATTGTGAGGCGGTGGTTATTCGAATCGAGATTGCGATAGTTGCTTGTAGGCCGGGGTTGCGGCCACCTGCGCTCGCGCCGCTCGACGGCAGAGCTTGACGACGAATCTTCGCGTAACCATACTCGCGACTTGCTTCACATCCTGAACATCGAAATCGATGTTTGTTCTTTTACAACACGATGTTAGGTGGTAGA # Right flank : CCACATGCACATCCCGCCCCCCCCCACCGCCCTCACCCCCTCACCGCATCCACCGCCCGCCGCGCAACCCACGCATCAAAATCCCCCCGCCGCCAATCAAGCTCCAGCGCAAGCCGCCGCGTGCCCTCGCGAATCTTCGGCTTATGCAGCGTCAGCGTGAGCGCATCGAGCGCGGGCCATGCGTCGAACGACAACGCCGCAATCTCCACCGCCAGCGTCTCGAGCAGCCGCGTATGCGGCTTCTCATGCAGATACGCGGTGACCCGATTGCACCACGCTTCGTAATCGATGAGACCATCGCTGTCTTCATGCGGCGTGCCACGATACCGCAGGCTCGCATCGATCGACACAGCCTGCGGCGCGCGATGCTCATGCTCGTGCAGGCCAATGCGCGTCATCACGACGAGTTCATCCACGACGACGCGCCAGCCCTGCCCGCCGGCATTCAAAGGCTCGAAGGGCTTCACGACAACAGCGGCTCGGCGGCATCGAGCATGATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCATGCGCGGAGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //