Array 1 171591-171202 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEC01000005.1 Pasteurella multocida subsp. multocida strain CIRMBP-0760 NODE_5_length_187683_cov_404.686, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171590 28 100.0 32 ............................ GATTGAGCAAGAGTGGCATTGGCAATATTTGC 171530 28 100.0 33 ............................ AGATGAAATGTCAGATGCAACATCTGAAACACG 171469 28 100.0 32 ............................ TGATAAAATCATCAAAGAGGCAACAGCATATC 171409 28 100.0 32 ............................ GATTAAGCGTGAAACGGCTTGGTCCACTTCTT 171349 28 100.0 32 ............................ TGATTTTTATCAATATCCAAGCAACTTGCGTT 171289 28 100.0 32 ............................ TTGTTAAGAACGCAACGGGTAATGGCATTTCT 171229 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAATGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCGACCTCATTTAAAGAACAGAAAAAGCCCACTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 100066-101712 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEC01000001.1 Pasteurella multocida subsp. multocida strain CIRMBP-0760 NODE_1_length_626912_cov_411.947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 100066 28 100.0 32 ............................ AAGCAGTAAAAGATGAGATTGCATCTTGTGAT 100126 28 100.0 32 ............................ AGTACTGATGATTTGCCCCTGATCAATAAAGA 100186 28 100.0 32 ............................ ACGGGTGATTGACTTCACAATGAACTTGAAAC 100246 28 100.0 32 ............................ TTTGCTCGCAAACCCAATCAACCACGCCTTAC 100306 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 100366 28 100.0 32 ............................ ATCTCTCAATGATACCGCGTTTTGGCGGCAAA 100426 28 100.0 32 ............................ AATCGGAACACGTATTCAGCGCAGAGATTATG 100486 28 100.0 32 ............................ TCGCTACCTGCGGGCGTTCGAATACAGCGGGA 100546 28 100.0 32 ............................ GCTTTATTCTTAGGTGGATTAAGTGCAATCGG 100606 28 100.0 32 ............................ TTAGCTAAGGAATTGGCTAAATAATGTAAATC 100666 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTCAAAAATCATATTAT 100726 28 100.0 32 ............................ TCGTGCCGAAAGTGGCGCACGGTTGTCAATTT 100786 28 100.0 32 ............................ AGTTCAGCATTGACGGTTACAGGTATTAATAC 100846 28 100.0 32 ............................ AAGTAAATCAGCTAAAAACAGCGCATTAGCGA 100906 28 100.0 32 ............................ ACCAAGGCGTCGCCCATAAGTCTTTATCGTTT 100966 28 100.0 32 ............................ GTTGGCGGTGACCACGTTGCCGTTGTGCCTGT 101026 28 100.0 32 ............................ ATTAGCGGCAACAAAACTGGCTTTTACTGTGC 101086 28 100.0 32 ............................ AAGTTTCCCTTGATGTTTTTCCAGTAGACCTG 101146 28 100.0 32 ............................ GAACGGCAAAGAAAATGGATTAAAAATCATTC 101206 28 100.0 32 ............................ ACGTTTGATATGCGGCAGCTGGACCCTCTAGC 101266 28 100.0 32 ............................ ATTGCACTAAACTTAATTATGATGGGCTTTAA 101326 28 100.0 32 ............................ AACCCCAAGAACCGCCATCAGCGGCACTGTTG 101386 28 100.0 32 ............................ TTTACAGTTTCATCTTGCACCTTTTTCCATGT 101446 28 100.0 32 ............................ TTTAACGATCCCATATTTTCTATTCACATGAA 101506 28 100.0 32 ............................ TTTCACCGGTGGCACCCAGCCCATCAGCCGCT 101566 28 100.0 32 ............................ GATTGAGTGGACAGGCTTAAATAACCATGATT 101626 28 100.0 32 ............................ ATTCTAGCGATAACTTGGTGATAACCTTGTCG 101686 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACATTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCATAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGTGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 115912-115678 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEC01000007.1 Pasteurella multocida subsp. multocida strain CIRMBP-0760 NODE_7_length_126709_cov_437.542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 115911 36 100.0 30 .................................... TAGACTGTTTCTCATATTGATTGCGATATT 115845 36 100.0 30 .................................... ATGAACAAGTCGCACTTAAATGCTTGTGTA 115779 36 100.0 30 .................................... ATTTCCACTCCGTGTAGCGAGCTTTAGCCA 115713 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ATGGATTGCCAATGAATAATGGAATTGATGCGGCAGGTAATCCATTTGGGTGCAATAGTCAAAGAGATAAAAATTATAATAATCAAGATTGATTTATAATTGGAAATGTAATTTTTTATTTAGTAAATGGCTTGATGGATAGGTTAGAAAATGAGCTTTAACGCAAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTACAAACATTGTCATGAGTTGGAGCTTTATTCTCTCCATAGTGGCTTTTTTTGGCTATATTTTTGCTGTTATGAAATTGGTCTATATTAAACACGCATTTGTTTACATGTATGTGAAATATATCATTTTTAACATAAGTAATAGTCTAAATAAAGCGAATAAGCTTGATAAAATCTATCAATTTGAATGGGAAACTTCAAAAGGTGAAGTCCTCACTGTAACGCGAACTTACGCGGAAATCTTGAAAGATGATTATTTCATTAAATGCTTTGAAA # Right flank : ATCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTGGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //