Array 1 2540549-2540277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018099.1 Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2540548 37 78.4 42 ACAAAT..T.C.......................... ACGCCCCGCACATAGGCGGAGCCGCACCGGGCTTAAGGTCTG 2540469 37 100.0 43 ..................................... TGTATACTTTGTCCGCTTTTTTGATACCTGCAATATCGTTATC 2540389 37 100.0 39 ..................................... TTTTAGAATGGATATTCTTCGATGGTTGATGGGTCGATT 2540313 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 94.6 42 GTCGGAAAGTACCCCGTTATTCAGAGGGGATTGAGAC # Left flank : ATTAACAAATAATTGCCTCGTTATTCAGAGGGGAATAAGACGGGATATTTGCTATTTTCTATTTAATAATTAAATTTAATGTTAATCGTTATTTAGATAGTAAAAGTATAAAGACAGTAAAATGAAAGCAGATGATTTAGAAAAGAGATTAATCGATTTTTCTGTAAAAGTAATAAATATTTGTAAAATTATGTCAGAAGATTATATAAGCAGGCATCTTTCGGTTCAGTTGTTGCGGAGTGCGACGTCTGTTGCAGCCAATTATGGTGAAGCACGTGGTGCAGAAAGTCGAAAGGATTTTGTGCATAAATTACGAATATGTTTGAAAGAGTTAAATGAGACTACAATATGGCTAAAAATTATTGAAGGCAGTAATTTTATTGAAGAAAAGGATATTAGAATTCTATTGTCTGAGAGTAAAGAATTACAAAAAATCATTGGCTCTAGCCTATCAACCTTAAAACAATCCAAATAAAATATCAAATATCAAATAATAATTA # Right flank : GAGGTATTTTCTATTTATTATTTACTATTTAAGATTTTTTGCGCGAGAAGGATCTGTTTTTATCACTATGATTTTAATTAAATAGAAAAAATCCGTGCCAATCCGCGTAATCTGTCCCATCTGTGTTCAAAATAGCACACGGATGGCGCGGATGATACGGATGGACGCGGATTAAAATTTTTTTAAAAAAGATAGTTCTTATTGTGTTAAAAGATTTCTCTCCCGCCAGGACGGAATGGCGATTACAATTCTTCCAACTTTATATTGAAGTCCTAAATAAAAAAATCCGTGCCAATCCGCGTAATCCGTCCCATCTGTGTTCAGAAAAGATAGTACACGGATGGATGCGGATTAAAAATCCTTTTAAATAAAAAAGATATTTCATTATTGTAGTTAAAAGCTCTCTCTCTTCGTTGGAAATGACAATACGTTCTGTTTAAAAGTGTAATCATAAAAAAATCCGTGCCATCTGTGTTCAAAATAGCACACGGATGGCGCGG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGTACCCCGTTATTCAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 3375861-3373049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018099.1 Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3375860 36 100.0 43 .................................... GCCGGAATTGGGGAGCTCGTTATCGTCTATTTCTTCCCAAAAT 3375781 36 100.0 40 .................................... TCTGGTAAAGCCCTGCGTAAGTAACTAATTTGTTACCTTT 3375705 36 100.0 43 .................................... ATTTTTCAGAATGCCAAGCGGTTTTAAATGCTATACTGCGGCA 3375626 36 100.0 41 .................................... CGAAAAGAAAGCCTACAAAAAGACAAACTAAGTAGTACATA 3375549 36 100.0 41 .................................... CGTGAAAAGCCAGTGGTTCTCCGCACTCTGGGCAGAACTTA 3375472 36 100.0 36 .................................... TTTCCCCCCTTTTCAAATTCTTTGTAAATTATTTTT 3375400 36 100.0 43 .................................... CGCTTCGCATTCCGAACTCATTGCGAGCATAAATTGCTGCCTT 3375321 36 100.0 43 .................................... TTCCCTCTCTGCATGCAGTAATTGAGTTTCCACTAATAACCGT 3375242 36 100.0 41 .................................... CTTTTAACCAGCTTGCGTAATGCTTCGGCATTTTTCTCTGT 3375165 36 100.0 41 .................................... CTTTTGATTTGATCTAACATCTTTTACTCCTTTTCTTTTAA 3375088 36 100.0 40 .................................... TGAGTTTCTGGATTAAACACCTTAGGATCACCGCTGTAGA 3375012 36 100.0 41 .................................... GAGGATAAAGAAGGGAAGGCTCTACGACGGACGTAAAGCCA 3374935 36 100.0 38 .................................... CTACCATTAAGATCTCCTTTTTGCAATAATTCTAACTG 3374861 36 100.0 40 .................................... CTATTATCATTTTATTAATAAGTCTAAGAACGGATTCAAA 3374785 36 100.0 43 .................................... TAGTATTCATTTCGTCGCTCCTTTATTCATTTTCTTCACTATA 3374706 36 100.0 42 .................................... TCACCGCTGTAGAATATTACGGTGTCCCACCATTTTCCTTTT 3374628 36 100.0 40 .................................... GGCTGCTGGGGCTTTATATGGCGACTGACTGGTTTCCGGA 3374552 36 100.0 41 .................................... CCATTTTCCTTTTTCTACTCTTCTTTTGATTTGATCTAACA 3374475 36 100.0 40 .................................... ATGTAATCCGTTTTTGCCTCCTTTTACAATGGTAATAATT 3374399 36 100.0 40 .................................... CAGTCTCTTGGATAGACTCAATCGCCTTCTTAGGAATCCA 3374323 36 100.0 38 .................................... CATCATATATAGTATTCATTTCGTCGCTCCTTTATTCA 3374249 36 100.0 42 .................................... TAATCAGCTGATGCTTTGGATAGGTCTTGAGCACTAAGTACT 3374171 36 100.0 37 .................................... CAATTTTAAGAATAAATAATCATTGATCCGTCCGTAC 3374098 36 100.0 43 .................................... ACGATTACTTTTTCCATGACTTTTCTCCTCAAGGTTAAAATTC 3374019 36 100.0 43 .................................... AGGTCTTCCCAATCGGGGAATAGTTCCCCGAAATAGAAGACCC 3373940 36 100.0 45 .................................... AATACCTATAAATTTATCCATAATAAACCTCCTTTTGGTTGACGT 3373859 36 100.0 41 .................................... AGGTCTTCCCAATCGGGGAATAGTTCCCCGAAATAGAAGAC 3373782 36 100.0 43 .................................... CTCTATGTTCTGTAACTCTAACAATCTCGTGAGCATGTTTTAG 3373703 36 100.0 43 .................................... TGAACCACTCACGGTCCGGGCTGAGGCGCTGGGCCGGATAATA 3373624 36 97.2 42 ...A................................ TCAGAAGTGGGATTGGGGATAACACAATATAAACATAATAGG 3373546 36 100.0 40 .................................... TGCTTTGATAGGGTTAAAATCGACCGCTTCGGCAAGCCGG 3373470 36 100.0 42 .................................... TAACCCCACGATATGTTTCATCACTTAAGAAAAACCAGACAC 3373392 36 100.0 42 .................................... CATAGCAAGGCCTCTTTTAATTTCCTCGTCAGTAGCAAATTG 3373314 36 100.0 37 .................................... GCAGTGTCAACGTGGCCAATAGCCGACGTAAAGCCAT 3373241 36 100.0 42 .................................... TTTTTCATTTTTTCTCCTCCTTTTTTGTTTAACTACGCACAA 3373163 36 100.0 43 .................................... GAAATCGAAACCGATTTTGGTTTTAATCGGTTCCGATCCTTTT 3373084 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 37 36 99.9 41 GTAGAAAAGGAATGACCTGCTTGAAGGGATTAAGAC # Left flank : GCGGCGTGTAGCAAAAACGATACAAAATTACGGCACGCGGGCGCAGAAATCGGTATTTGAGCTGGAGGTGGAGGCGGAACAGATTTCGAAATTGCGTAAAGAGATACAAAAAATAATTGCGGATGAGGATTATGTGGTTTATTTTAATTTGTGCGAGGCAGACTGGCAGAAGCGAGAGAAATACGGTAAGGGACGTTACGACGAGGAACCGAACGAGGAATACTATATTTATTGAAGTGAGCTCCATTGCGTAAGGCATAGGCCTTTAAGCGCTATGCAAACAGATCAAAGTAGATTTGCGCGAACCGGGCGTAACAGGTAAAAAGCGCCTATTTAGCAGGGGGTTCGCGCAGGCTTTGTAAGTTCTTTGAAAACAAGGGAGTAGCTTTGAGAAAAGCGAAGGTGGAGCGGGGATAGGATAAAAAGATACGAGAAAAGAAAGAAGGTTCGCGTACGAGGCTATGTCAATCCCTGATATGAGCGGGTTGGCGGCTGCCGGA # Right flank : GCGGTCGAAGCGAAATCCTTTTCAGAGCCTGTGAAAGATTCTTGCCTAATCCCAGAATAAAAATCTGGGAGATGGGTACAGCAGACCGAAATTACAACTGACAACCAGTGCAAGCAACCAGTGCAGGCAACCAGTGCAAGCAACCTTTATTAAAGCCGCAAAAGCATGGCCGCTTTTATTTGAACCTTTAATCATTAAACCTGGCATGTTTTTCCAGGGCTGGCCTTCATTCCGTCCTGCCCTGGAGGCTGTTGCAAATTCAGTTTGAGTAAAATTCAAAAAATTTGTAAATTCTGGGCGACAGATAAAACAAGTAATAACAAAGGAATTCCATGAGTTTTATTACTTATAATCGCTCACAAATGAATCTCTTTGGCTATAGTGTGGAAGATTTTGCCAGAGACGATCCAAAGAGTCGATTTGTAGTGGAGTTGGTTTCGCGCCTTGATTTAAGTGCACTTTATTCCCGTTATAGTTCACAAGGCGGTGATTCTTATGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAAAGGAATGACCTGCTTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 4500980-4498854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018099.1 Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================== ================== 4500979 30 100.0 36 .............................. TTTAATTCAAATCCATCATTTTCTTCAGATAGTTTT 4500913 30 100.0 35 .............................. CGCGTCCGGTTGCGTAGCCACGTAAACACTAGCCT 4500848 30 100.0 36 .............................. CCCGGACAATCTGCGAGTTGCATCTTTTATTAAGCC 4500782 30 100.0 37 .............................. AAAACGTTCTTGTTCAAATAACGTTTGCGCAATATAG 4500715 30 100.0 35 .............................. ATCAATAACAATAATTCCAAAGTGCCAGCTATTAT 4500650 30 100.0 37 .............................. GAAGTTGTACACTTTACGTTGTCTTTGTTCATGAGTT 4500583 30 100.0 35 .............................. AGATAAATCTTGCGGATGTTCTTTATAACGCTTGA 4500518 30 100.0 37 .............................. GGCAATAAAGGCTTTGATTTTATTGGCGGTTTGTGCT 4500451 30 100.0 34 .............................. CAGATCGAAGCGCTTAAGGAAGACCGTTCACAGA 4500387 30 100.0 38 .............................. AGGTTACCCCAGGTTGAATCTGTGCAATGTAAGATTAT 4500319 30 100.0 38 .............................. GCCTTGAGGGCTTTGTAGATGACTGATCTGGAAACACC 4500251 30 100.0 39 .............................. AAAGGAGTTACAGCGACTTTAAAAATAGGTTGTGCTTGT 4500182 30 100.0 38 .............................. TACTGTTTACACCACAAGACTGTATCACCTGGAAAAAC 4500114 30 100.0 35 .............................. ATGTGTTCCATTTTTTTCTCCTTTTTTTTGGTTGA 4500049 30 100.0 37 .............................. TTGCTCATAGGACTTGAAAGAATCCGGCAGAGACTTT 4499982 30 100.0 36 .............................. AGGAAAAAGCTTACAGATTTAAGAGCCGGGCAATTT 4499916 30 100.0 34 .............................. ATTTTTTCTTGCTCATGTATTTTTGTATGACAAG 4499852 30 100.0 37 .............................. AGGATATGATAGCCCGGCCGCTCCACTATTTCAACAA 4499785 30 100.0 35 .............................. CCCAGTGTAACCGTATACGAAGTGGTTTCACCAAA 4499720 30 100.0 35 .............................. GCGCAAATAAGCATAACTAAACATAAAGGGAAAAG 4499655 30 100.0 34 .............................. AATATATTCTTATCGAAATACGTTTGGCCATAGA 4499591 30 100.0 34 .............................. AAGTTTTAAAGCAAGAAAACAAATTTAACCTCGA 4499527 30 100.0 37 .............................. CGGCTATTGCCCTCCTATTTTAGTTTTAATAAAAAAC 4499460 30 100.0 34 .............................. GGATGCAATCTGACTGTTTTTTTCCTGCCTCTTA 4499396 30 100.0 38 .............................. ACTCTTAGATAGGCCGCGGAGCTGTCAGGAATCGGAAT 4499328 30 100.0 39 .............................. GGTGAAAACTTTATTGCATCGCTAACCGGTTTAACCAGA 4499259 30 100.0 36 .............................. CATAATTAATAGCTTTTTGTATAGCCTGTGTATCAT 4499193 30 100.0 36 .............................. CCGTTGAGCTTCGGCTGTACACCGGTATCTGGCTTA 4499127 30 100.0 36 .............................. GCCTTATTACTTTCTTCAATCAGTTTATCGACGTTG 4499061 30 100.0 36 .............................. TTTAACTCAATTACGAATTAAGAATTACGAATTACG 4498995 30 80.0 82 A...........CA.....A..T...G... AAAGATGGGGGGGATTCCTGCTTGTGTGGGAATGACGGTTGGAGCGAAGCATGGAGGGGATTCCCGCTTGCGCGGGAATGAC 4498883 30 76.7 0 ....GG.G...TC.G.......G....... | ========== ====== ====== ====== ============================== ================================================================================== ================== 32 30 98.6 38 GTTTTAATCGAATCAGAGTGGGATTGAAAC # Left flank : AGTTACGGTCATTTAATTAAGCTGGAGTGCTACAAATTGATTAAAGATATTTTAGGCGAACAGCCTTATAAACCGTTTAAAATCTGGTGGTAAAAGGAGGAGGGAATGGAGCCGTGTATGTGATTTTGGTTTACGATGTTGGCGAAAAACGCGTGGGCAAAATGCTCAAATTATGTCGTCAATATTTGAATTGGATTCAGAATTCGGTATTTGAAGGCGAGATTACGTCGGTAAAATTAAAAGAGCTATTGAAGAAAGCGAAGCGTTTGATGGATATGGATAACGACAGCATTATTGTATTTAAAAGCAGAGATATTAAGTGGTTAGAAAAAGAAATAATCGGTCTGGAAAAGAATCCGCTGGACACCATGCTTTAAGAGTCGTCGAACCTCAGGGGAAAACGTACAATTAGAGATCGACGCGGCATCTATTAAAAATATGCGGAAAAGGATTTGCATAAGCCATTGAAAAATGGTATTTTTTTTGAGCCTGAACAACGG # Right flank : AGGCACGGAAGGGATTCCTGCTTGTGTGGGAATGACGGTTGGAGCGAAGCATGGAGAGGATTCCCGCGTTCGCGGGAATGACGGGTCGGCGGGGCGTTTTAATTTGCCTGGCAAAGCACCTTCTTTGTTTTCACTCCGAATTTGATTATATTTAAGCGTAGCGTGTAATTTCCCTTGAACAGCGCCGATTCGATTGCCGACTTGAGAACCGATACATACTTGAAAAAAACCGGAAATATTTTTAAAAAAAATGCGTTAATTATGTTTCAATTGACAACGGTAAATTAACAATAAAAGGAAATACAATGAGTCAGAAAAATTTAAAAGAAGAAGATTTAGAATTACAGGAGTGGCGGGAATCTCTCCAATATGTGATCGAGCGCGGCGGCCCGGAGCGCGTTAAAAAGTTAATGAGCGAGTTGCAACAGCAGATTTACGCTTCCGGCATAAAAATGCCTTTTACGGCCAATACGCCGTATATTAACACCATCCCTGTAGAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAATCAGAGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //