Array 1 12905-10625 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFHJ01000002.1 Listeria monocytogenes strain 2842STDY5753941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12904 36 100.0 30 .................................... TAATCGAAAACGGAAAATCGAAATTGGTCC 12838 36 100.0 30 .................................... GTGATAGTTCTGTTTAGATCTACACTTTTT 12772 36 100.0 30 .................................... ACGTTCTTCCGCAGAGAGTTCAACGTAACT 12706 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGGAAAACCA 12640 36 100.0 30 .................................... AATGAAATGGATTTAAAGACTATCTATGAC 12574 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 12508 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 12443 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 12377 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 12311 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 12245 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 12179 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 12113 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 12048 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 11982 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 11916 36 100.0 30 .................................... ACCTTACGGAAGATAACCGCATTGGCTTGA 11850 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 11784 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 11718 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 11652 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 11586 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 11520 36 100.0 31 .................................... CAGGCGCGTGCGCGACGTTTCTGTCAGGCGC 11453 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 11387 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 11321 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 11255 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 11189 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 11123 36 100.0 30 .................................... TTGTTAGCAGAATCACGACGTACAGAAAGT 11057 36 94.4 30 A..................G................ AACAAAATCATCATTACCTGTGGAGCTGTG 10991 36 100.0 30 .................................... AGAATTGTTTACATATTCGTCATCCCAGTA 10925 36 100.0 30 .................................... TCTGTTTGCAGGCATTGGCGGATTTCGTTT 10859 36 100.0 30 .................................... TAAAAGTAATGAATTATTCAGAACCAAGAA 10793 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 10727 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 10663 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [10628,10631,10636] ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //