Array 1 14072-14344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000010.1 Nocardia farcinica strain BJ06-0139 NODE_10_length_92687_cov_40.339996, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14072 29 79.3 32 A.GAT......GT................ GGCAACTCGACATCGATCCGCTCACCGCCAGC 14133 29 100.0 32 ............................. GTCGCGCTCGGGCTGTACGAGTACAGCCGCCG 14194 29 100.0 32 ............................. GCCACGGCGTCGGCCCATTCCTCGGGTCGGTG 14255 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 14316 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCGCAGGATCATCTGGCGACTGGACTGCTTGCTGGGGCTGATCAGCGGATTGCCGACGCACCACGCGGCCGGTGCCGTGACGGCATACACTCCGAGCCCGGTGGTGGTCTGGTCGAGTTTCCAGTTGCCTAAGGCGCCAGAGGTGGGTTGTTGGTTGAGGACCACGAGCGCGGCGTCACAGTCGGCGGCACGAACGAAGTCTGTGATCAGCCGCCGCGCTCCGGCGACGGCATCGAGGTTGGTAAATCGGGTGATGCGGGCTCGGGCGACGGTCAACACCTTCCGACCCGATCCATCGTTCGGTCAACGGAGAACGAGTAGCGGGTACCAGGGTATTTGGCAGCGACCGGGCTGCCTGCCACACCCCTCCAGCGAGGGATGATCCCCGCGTGCGCGGGGCCGACTGATCGAGGAAGCGAAGGCCGTCGAGGCGCTGGGGATGATCCCCGCGTGCGCGGGGCCGACCATTACACGGAAGATAATTGAGATGGGGCGATTGG # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTTAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCGCCAACGAGGCATTGAGCCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCCGCATACGTTTTCAGCCCCAACGCGGAGCGGATATGGTGCGTCGCGGCTGCACTCGAGGCCGGCATGGTCGGCATCAACTCAGGCCTGATCCCCAACGAGACAGCGCCGTTCGGCCGCATCAAGCAATCCGGCCTCGGCCGGGGGGTCGATCAATGGACCATTCGCAGCACGACGGCAGGACCGACGTCCCGTCTCTCCAGCTGCGTTTGTGCTGCACCGATGTATACTCCGAGTGTCTCGAGTGAGGTTGTGCTGACGCGGGATGAGCAAGGGGGGAGTGAACGTGCCAGATCCGTCGACTTCGCTGACAGTGACCCCAGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 894269-893387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000002.1 Nocardia farcinica strain BJ06-0139 NODE_2_length_1052099_cov_40.250223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 894268 28 100.0 33 ............................ CGGCGTGACCGTCGCCGGGTCCAGCGCCACCAT 894207 28 96.4 33 ...........C................ CGGCTCCGGCGAGAACTTCACCGGCATCAACAA 894146 28 100.0 33 ............................ CGTCGGCTGGGCCTCGTGCCCGGCCCGAGCCGT 894085 28 100.0 33 ............................ CGGCTTGGTGGACTATGGGCTCGGCCTGGTCGC 894024 28 100.0 33 ............................ CAAGGTCGGGCCGGTGCTGCGCCGCCACGGGGT 893963 28 100.0 33 ............................ CCCCAACCAAGCAGTTCGAGGTGGTGCCCGTGG 893902 28 100.0 32 ............................ AGGATCATGTGCCTGGGGAACTGGGCCAGGAT 893841 28 100.0 34 ............................ CGTCAGCTGGATCGCGATCCACACCCAGCAAGGG 893779 28 96.4 33 .G.......................... CGCAGGCGCGAGCAGCAGCTCGCGCACGACGGC 893718 28 96.4 33 A........................... CACATGCAGCCCGTCACCGGAGGGCGAGACCTC 893657 28 96.4 32 ..............C............. AGGTCCGCCACGGTGGGCTGCCCCGCGGCCAC 893596 28 92.9 33 ..............C.........G... CATCGGAGCCGTCAGCGTGTATGCCGCCTCTCT 893535 28 100.0 33 ............................ CTCCTTGAGGTCGAGCATCGACCGGTCCGGAGC 893474 27 85.7 33 ...........A..C.T...-....... CGCGGCGATCTCGTCGGCCCGGCCGCCGTCATG 893414 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 15 28 97.4 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCGGCGAGGTGCTGAGTGCGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGAGCGGAAACTAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGAGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCTGCGACTTGGTCGCGTTCGGGCTGGGGGAGGTCGTACCCCCGCGCACGTGGAACCGCCTTCTTCGGGCGGGGCAGCAACCGCACCAACCGCCCGCTTGGCTCCGGTCGAATCCGCCGGTCTCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACATGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1009888-1009431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000002.1 Nocardia farcinica strain BJ06-0139 NODE_2_length_1052099_cov_40.250223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1009887 28 100.0 33 ............................ CTCGAACGGGGTGAAATCGTCGGCGCCGGCGAT 1009826 28 100.0 33 ............................ CGGCATGGGCCCGGTCAGCGCCGCGGTGAACAC 1009765 28 100.0 33 ............................ CTGCCATGTCGTGGTCAAGGCCCGATGCAAGGC 1009704 28 96.4 33 ...........A................ CCGATTGCTTGGCAGGCAGACATTTACGGGCAG 1009643 28 96.4 33 ............T............... CGCGCCGGTGAGCTTCTCGCGCAGGTTGAACTC 1009582 28 92.9 33 .......A...................T ATTGTGCCTGGCTGTCGCGGGTTCGAGTCGCGT 1009521 28 89.3 33 .....TG...............C..... CCGGAGGTGGTCGCCCGTGAGCGAGTTGGCGCG G [1009495] 1009459 28 85.7 0 ......T........A..T.A....... | G [1009436] ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.1 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : CGAGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : GGTATCAAATGCTCGGGACCTCAGCAGGGCGCCTTGCTCCTGCGGGAGCAGGGGGACGAGCACGACCGTGTATGGCTCGACAATGGACTCAGATTGCTGTGTTCCCCATGGATGCGTTTGAGCGCTGAGGCCGCGCCCTACAGTGCTCGCGTGCACTGCGTCGGCAATCCGGCGTTGGTTGCCACCTGTGAAACTCTAGAGTCCGTGAATCGAGGCATTCCAATCCTTGGAGGACATACCACCGAAGGGGAAGTGCGGCGGGGGTGACGGTCAGCATCCCCGCCGCACAAACCCCGCATGCGCGGGGAGGGGGCTAGAACCAGACTGGGTTCATCCCCGCCGATCGCGGGGAGTCGGACTTGCCGTCAGTGGTGTCAGCGCCCACTGGGGCTCAGTCTACAGAGAAGACCGAAGTGACCATTGCCGCGATCTGACGACGCCAAGATCCGCCGCGCTGCCAGCACCAAGCGACGATATCGGCGATCCACAGGAAGGGATCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1019356-1018959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000002.1 Nocardia farcinica strain BJ06-0139 NODE_2_length_1052099_cov_40.250223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================== ================== 1019355 28 100.0 33 ............................ CTCCTGCCGGACGCGGCGGGTGTCAGGGACGAT 1019294 28 100.0 33 ............................ CAAGGTGGACCAGTACCTGTACGGCCTGCTCAA 1019233 28 96.4 33 ..............C............. CGGACAATCCGACGTTTCCCCGATAGCTTCCGC 1019172 28 92.9 46 ..............C..........A.. CCATCTGCTCGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTAGC 1019098 27 75.0 85 A..T....G..A.....C..-......A CGGTCCGCTGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCCGCACGAGGGCGACCCCTCGGCTGGTAACGCCACCCCGCCGC 1018986 27 75.0 0 ...TG........C.......G.-..GA | C [1018965] ========== ====== ====== ====== ============================ ===================================================================================== ================== 6 28 89.9 46 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GAAGAGCACGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGCTTGTGTTTCCACGTTCCGAGAGTGCTAGGACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACTGTGGGTTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CACACGACGACCGAGCGGCCGAGCGTTCCGAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACCGGGGTGGAACGACTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTTTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTTTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTTGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGCACGACATCGGGAAGCTCACGCCGGCATTCGCGTGCCAGGTTCCCGAGCTGGCCGACGCGATGCACGACCGAGGGCTGCGAATGCCGGATGCGCTCGGTGACCGAAAGGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1022119-1021603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000002.1 Nocardia farcinica strain BJ06-0139 NODE_2_length_1052099_cov_40.250223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1022118 28 100.0 33 ............................ GACCCACCGCCGGATCCGCCTCACTCGATCGAC 1022057 28 100.0 33 ............................ ACTCGCGCTCGGTCGACGGCCAGAAGAATGCGT 1021996 28 100.0 33 ............................ GAGCCCGTGACGGGCGCCCCGCAGCGCGGCGAT 1021935 28 100.0 33 ............................ CTGCTCCAGCCGTTGCCGTGGCAGGAGACCGCG 1021874 28 100.0 33 ............................ CGAGCTGATGCGGGATTTCGTAAGGGCACCCGT 1021813 28 100.0 33 ............................ CAATCGCCGCGACCCTTTCAGCAACATGGTCGC 1021752 28 100.0 33 ............................ CACCAACCATCCCGACGCCGACCACCTGTGTGC 1021691 28 100.0 33 ............................ CGCCTGCCGCACGTTGATGAGGTGGCCGAGAGT 1021630 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TGTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAACGGGCGCGCTTTTTGTTTATTTTCTTGGGCCTCGTCCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCGGGACTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGCGCGGAGGCCGTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTCGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : TCCTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTACCACAGTTGTTCAATCGTCGTATTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGTCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCCTCGTGAGACGCACTTGGCGCGCCAACTACACACCGTTGATGGACAAAAAAGCCAGTCGAGCGAGCATGAACACACCGGCGCGCCGGGCCTTGCACATTAGCCTCGCCGGTCCCGGATGCTTCTACCTGTTCGACCAACCGTCGTGTGCTCTGCCAATCCCAACTGCGGTCAGAGCAGTCGCGCACCCGGCGGTATCCCGCTCCGGCAGCCAACTGCACGCGTCCACCCGTCCCGGCGCGTGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108757-108056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000005.1 Nocardia farcinica strain BJ06-0139 NODE_5_length_673073_cov_39.783730, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108756 29 100.0 32 ............................. GTCTCGGTGTCGTAGTCCTCGCGGGCGGTGTC 108695 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 108634 29 100.0 32 ............................. AAGCGCGTGCCGCGCGTCATCATCGGCACGCT 108573 29 96.6 33 ............................A TCATCCGCAAGAACCGCGACACCACCGTGCTCC 108511 29 100.0 32 ............................. GGGGCCGCGCCGCTGGCGAGCGTGGCCAGCGC 108450 29 96.6 32 ................T............ GCCTCGACCAAGCTCGAGGTTTTCAAGCGGCA 108389 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 108328 29 100.0 32 ............................. CCGTACCACCACACCGGGACGTCGCCGCGATT 108267 29 100.0 32 ............................. GTGTCGAAGGTCTTGACGTGGAGACGGACCCA 108206 29 100.0 32 ............................. TCAGATCGGATCAAGCGTCACTGCCGAATCTG 108145 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 108084 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGTCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116587-115950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQK010000005.1 Nocardia farcinica strain BJ06-0139 NODE_5_length_673073_cov_39.783730, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116586 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 116525 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 116464 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 116403 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 116342 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 116281 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 116220 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 116159 29 100.0 32 ............................. CCTGCGGCTGCGGTCAGGTGCGACCCAGCGTG 116098 29 96.6 32 .................A........... GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 116037 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 115977 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTAGTCGGTCTCTCACGCGCCCCTTGGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACTATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGCGCTCTTCGAGGCGGGTCGGCATCAGGTTCATCCTTTTCGCCCGGAAGGAGCCGCCGACTGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAGTTCCTCTGGGGTGACGCCGAGTTCTGTGAGTATCGCGCGCAGTTCTGCGAAGGCTTGGGGGAGGTCGGGTTCTTCGGCGTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //