Array 1 9811-8549 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CYUX01000004.1 Listeria monocytogenes strain LM06-00444, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
      9810	    29	 100.0	    35	.............................	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG  	
      9746	    29	 100.0	    37	.............................	TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG	
      9680	    29	 100.0	    36	.............................	TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 	
      9615	    29	 100.0	    36	.............................	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 	
      9550	    29	 100.0	    37	.............................	AGTATCGCCTTCGCTAGGCGTTTCGGGCGGCGTTTCC	
      9484	    29	 100.0	    36	.............................	ACTTTAGAGAAAGAAAAACAAGAAAAAGTAAAACTG 	
      9419	    29	 100.0	    37	.............................	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC	
      9353	    29	  96.6	    35	............................A	GTAACAAGTAGTGTTATACCTGCAACAATACCAGC  	
      9289	    29	 100.0	    36	.............................	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 	
      9224	    29	 100.0	    36	.............................	GTCCACATCGACAATAAAAAACACATTGTATCACTT 	
      9159	    29	 100.0	    36	.............................	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 	
      9094	    29	 100.0	    34	.............................	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG   	
      9031	    29	 100.0	    33	.............................	AGAAAAAAACATCTTTCCAATTTGTTGTTTTGC    	
      8969	    29	 100.0	    37	.............................	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC	
      8903	    29	 100.0	    36	.............................	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA 	
      8838	    29	 100.0	    36	.............................	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 	
      8773	    29	 100.0	    37	.............................	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG	
      8707	    29	 100.0	    36	.............................	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 	
      8642	    29	 100.0	    35	.............................	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT  	
      8578	    29	  93.1	     0	.......................C....C	|                                    	A [8553]
==========	======	======	======	=============================	=====================================	==================
        20	    29	  99.5	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                     	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG
# Right flank :  GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [3-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.91   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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