Array 1 3526-2418 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRM01000020.1 Dickeya fangzhongdai strain AP6 NODE_20_length_68997_cov_10.3082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3525 29 96.6 32 ............T................ TCAGGCTGAACAAAATCACACTCCCGGAAAGC 3464 29 96.6 33 ............T................ ATGGCAGACGCTGCCGCGAAAACCGGGGTCTGC 3402 29 96.6 32 ............T................ GCTCTTTCAGTCGTTCCAGAAGATAATTCATA 3341 29 96.6 32 ............T................ CGGGATATTTCTGTCGCCGATAGCGTCTTCGT 3280 29 96.6 32 ............T................ ACGTTGTCGTTGCTGTAATCCGTCTGCTCGAC 3219 29 96.6 9 ............T................ CCCGGCGAT Deletion [3182] 3181 29 82.8 32 C..G...T...C..T.............. GTGCCCCCGGCTTTACTGGGGCGGTATTATTA TT,A [3164,3171] 3117 29 100.0 32 ............................. CGACTGACAGTAAACCGCTCGAAACTGCTGAT 3056 29 100.0 32 ............................. TGGTAGTACTTGTAAATATCACCGATTCCGGC 2995 29 100.0 32 ............................. CGAGCCAGAACGCTTTTTGTGCAAACGAAATC 2934 29 100.0 32 ............................. AGCCGAGCGGCTACGCTCATCAGTCATCAGGT 2873 29 100.0 32 ............................. GAACGTCCCACAGTGATAGCAAGTGGCACGGC 2812 29 100.0 32 ............................. CGCACGTTTACGCTGTTCGATTGCTGGGATAC 2751 29 100.0 32 ............................. TACGCATAACGGAGAATGTAATGAGCGGTAAA 2690 29 96.6 32 .............T............... TGCGCTAACGTCTATCGCCACGGTTCGGTCGT 2629 29 100.0 32 ............................. CTGTTGTCGCCGGCGAGCGCCCGGACAAATTC 2568 29 100.0 32 ............................. GGCTACACGGACACGCGCGAAACAGTGATTAA 2507 29 100.0 32 ............................. TATAATATTGACGGATCCGGAAAAATTTCTAT 2446 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCCAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGCCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGTGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTCCAGGCTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : GCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCGTTTAATTTCTTTTTTGTGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTTAAATGCCAGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCCC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24332-24720 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRM01000062.1 Dickeya fangzhongdai strain AP6 NODE_62_length_29539_cov_8.57333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24332 28 100.0 32 ............................ CATAGCTATGTGGGATATTGATTTGTATGCGT 24392 28 100.0 32 ............................ ATCGAAACCCAGCAGATACGCGGCCTGGAGTT 24452 28 100.0 32 ............................ GATCAGGTGGTCGCGCCCTTACAGGCAATGGC 24512 28 100.0 32 ............................ ATCCGCGACGCGCTCCAGGTAACGAATGGCGT 24572 28 100.0 32 ............................ GGTAGCTGTAGCGCGACGTGCCAACCGATGCG 24632 28 100.0 32 ............................ TGTGGTTTGTTGCCGCCGAATCGCGTGCCGAG 24692 28 75.0 0 ............AC.......A..TCCC | A [24713] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAAACGCGGCGCTGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAACGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGTGTCATCGCCATGATCACCAGAATCCCGGCCAGAAATAGCAGGCACAGCACGTTGGTAAGCGGATAGCCCAAGCTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGCTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTAACCGTCAGCAGTGCGCGCGGCGCGTTACCCTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36744-35433 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRM01000037.1 Dickeya fangzhongdai strain AP6 NODE_37_length_43228_cov_8.82121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36743 29 100.0 32 ............................. GATAAATATATGAGACTTTTTATTGCAGAAAA 36682 29 100.0 32 ............................. CCAAATTGCGCCAGGCCCAGCAGGCGGCCGAA 36621 29 100.0 32 ............................. AGCAATTCGGTGATGGTGACTATGCGAATGAA 36560 29 100.0 32 ............................. ACCTGCTTGTCATTGACGAAGTCGGCATGCAG 36499 29 100.0 32 ............................. CGATCGCTCGGTACACGCAGCGCCAGCTAATC 36438 29 100.0 32 ............................. CGTCCATCAACTGCTTGCGTTCAGCCAGAATG 36377 29 100.0 32 ............................. CCGCTAATTCCAGTCACAACGCAATCGTCGGA 36316 29 100.0 32 ............................. GCTTCCGTTAAGCCGTTGAGCCACTTCATCAG 36255 29 100.0 32 ............................. CCTGGCTGTTTGCGTCAGCCGCGCTGTGATGT 36194 29 100.0 32 ............................. CTAATTTTTAATCCGTTCCCCGGCCTGACGGG 36133 29 100.0 32 ............................. TGAAAGTGGTTGCGGTCGGTACGGAAAGTACA 36072 29 93.1 32 ............AG............... TTGCAGGAGGACAGCTATCTGGAGCATGCGGG 36011 29 93.1 32 ............AG............... TGCCATGCGCTAATCGAATCAGACCGCTATTT 35950 29 93.1 33 ............AG............... TTCGGCGTTTGGCTGGTCTATGGCGATGGTTGC 35888 29 100.0 32 ............................. CCATCCAGTTTGTGCGTTACACCATGATGCCA 35827 29 100.0 32 ............................. GCCATCACGTACAACCGTTCGGACTGTTCATA 35766 29 100.0 32 ............................. TCAGCCAACACGGAATCACGGCAGGCGTCAAA 35705 29 100.0 32 ............................. TTCGATGTCATCTACATCGGCACAATCCTGCA 35644 29 100.0 32 ............................. AGATTTCATCCTCCTACCGCTACAGGCTCGAC 35583 29 96.6 32 .C........................... TGGTAATGCGTCAGGAGGCCACAACCATTACG 35522 29 93.1 32 ............AG............... GGCGATGCTGAATTAGCAGCCTGGCGAATAAC 35461 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAACGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : TTGATTAAGATAGCCTGATCGGCGGCCGGTCACGGAAAAAGCCACTACTCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCTGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //