Array 1 355657-356194 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPK01000001.1 Streptococcus oralis strain BCC10 D8801_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================================= ================== 355657 25 100.0 47 ......................... GTTGCTTCCTACAACAAAAGCCAGAACCTCAATTCGTGATTCTGTTA 355729 25 96.0 51 ........................T TTGACTGTCTCCTATGAGACTTTTTAATTTCTCCCAGCAGCTCTTTGGTTA 355805 25 100.0 47 ......................... AATGTGGGTCTAGGTAATGTGGCTTCTCAACCTGACGTGAATCGTTC 355877 25 100.0 39 ......................... TCTATCTCCCACGTTAGGATATGATGAAGCAAATTGTTA 355941 25 100.0 65 ......................... ATTATCTTTGGGCGACGATCTGAAGTGTCCCAGTGAGTGACTTGAACACTATAAGTTGGACGTTA 356031 25 100.0 47 ......................... GCTTGTCCCCAGAGTCCGTTAGTCTCTGCGTCGAATGAGAAAAGTTC 356103 25 100.0 42 ......................... GAGCGAGCAATATCACGATTGCGTTTATAAGGTTGGTCGTAA 356170 25 84.0 0 .....................GTTT | ========== ====== ====== ====== ========================= ================================================================= ================== 8 25 97.5 48 TACCTTACCTATAAGGAATTGAGAC # Left flank : CTTCAAATAATCGTCCTTACAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCGGTTATCGTGGATCGAGTGATTTTGAGTTTGATCAATAAACATCAAATCAATGCCACAGATCATTTTGAAGAAAGGGAAGATGGCTCGGTTTATCTGAATCGGGAAGGGAAGTATATCGTCTTGAGAAGTTTTGAGGAAAAACTACAGACGAGGCTAGTCATGGGAGGATCGACCTATACCTATGCCCAGCTCATCCAGCACGACATTCGGCAGTTTAAGAGAATCTTGCAGCAGGATGGGGACTTGAAGCGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTCTCTTTTTCAAAAGCTGTCAACCAAGCGGTTTAGGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCACTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTTGTTA # Right flank : TGTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGCTTTCATGATGAATATCTTATTCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAATTTAGAAGATGCTGAAAAAAGTGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGAGGTGTATCGAATTTCTTATTATAATCAAATCAACAAACTTGAGTGTTATGATCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAATT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 357876-358416 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPK01000001.1 Streptococcus oralis strain BCC10 D8801_contig001, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================== ================== 357876 25 100.0 51 ......................... GATCCATCATTTTGACCTCCGCCAACTGGGGCTTTGCCCTGATTAGCGTTA 357952 25 100.0 48 ......................... CTTGCCATTCCACATTGTACCCCAACTCATCCAAGACTGAGATAGTTA 358025 25 100.0 48 ......................... GCTCCGCACTTTGGACAAGGGAACTTATGCATCACTTTGCCTCCGTTA 358098 25 100.0 49 ......................... TCGTCGTTTGGGTGACGAAAAGGAATATGCGAATATGAATGTAACGTTC 358172 25 100.0 42 ......................... GCTGCTGCAAAGGCTTGTGCATTCTTGTTACGTTGAGTGTTC 358239 25 100.0 49 ......................... CCTGAGCTTTTTCTTGATTGGCAGCTCTTTGTGCTGCTTCTGTGGGTTA 358313 25 100.0 54 ......................... TTCGTTTGATAGAAAACGTCTTTGCCTTTGTTGTTGTAGTAGACCTTTCCGTTC 358392 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ====================================================== ================== 8 25 100.0 49 TACCTTACCTATAAGGAATTGAGAC # Left flank : TCTGATAAACTGAAGTTGCAGAAGGCTTACACGACCTTTAAAAATCAATTTCTGCTTCCGGAACTTTGCCCGCAGGAGCAGGCGATTGAGATCTACGAATTGCTGCAAACTTCTCTCTATATCGAGAAGCATATCAATCTCCTAGATAGTCAAATCAGTGAACTGCATGATATCAGCCAGACGGAAGCAAGCAATAAATTGAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATCATTCCGAACATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTTATCTATTTCAAAAAGCGAAAATAAATGTATATTATCTGGACATACGATGCTCATCACAAGCGCGTGGCTAAGGTTTTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGCAACAGCGAAAATGCTGTTGTTA # Right flank : CACGGTCTTCCATTTTAAATTATGTGGATTTGGATGGTTTTTAAGTTCTAGATTACCTATAAAATATTGTCCATGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCACGTCTGCTAGGAAGCATGAGAATTTGTTCGCCTTTTGTTTCGTAAGAATTATCAAGAAAAGCTCTCTTAGTAGGAGAGCTTTTTCCGTGTTTCAACCATGATAGTATAGAGCCTAAGTTAGATAACTGGTCAGTTTTTTGTTACTTCATGATAGTGTTACGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTATTTTCTATTTTATTTACCGAAAAAGCACTGTAATACAAGTAACCAATCCTTCTGTACTAGTCCTTTTTTAGTTTATCTATGGTATAATAGAAGATAGATTTATCAATTGGAGAATGAAGGATTTTATGATTAAACTTGTAGCAACTGATATGGACGGAACCTTTCTAGATGGAGAGGGGCGG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 17168-18258 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPK01000006.1 Streptococcus oralis strain BCC10 D8801_contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17168 36 100.0 30 .................................... AATGACACAAACACACCTTGCTCGTGCTTG 17234 36 100.0 30 .................................... GCAGATGGTCGAGACCAGATCGCAGACAGA 17300 36 100.0 30 .................................... AATCCTATTGCAAGTTGGTTTGTAGGGAAG 17366 36 100.0 30 .................................... AATGACACAAACACACCTTGCTCGTGCTTG 17432 36 100.0 30 .................................... AATAAAAAATTGCAATTATCAATAAAAAGG 17498 36 100.0 30 .................................... TAGAGTTAAGATTTCACCTATTACAATTGA 17564 36 100.0 30 .................................... AGCTGAGTTAATATCTTTGTTGTTCATGCC 17630 36 100.0 30 .................................... TCTATGTTTCCCCAGTAAACTTTAAAGCTA 17696 36 100.0 30 .................................... GCCTTTGCTGATTTAGGTTACGGAGTCGAT 17762 36 100.0 30 .................................... TGCCCATTCAATATTACCTAGAGCTAACAT 17828 36 100.0 30 .................................... TCCTTGCTCTCCATGTATCGGCGAATAAGG 17894 36 100.0 30 .................................... GCAAGTAACAGACAGCTGGACAGGTTTAAA 17960 36 100.0 30 .................................... AAATATGGTGCATGGAAAAAGGATTCCAAA 18026 36 100.0 30 .................................... CTGTCCATTGGTTGATATTGGCGCTATCTA 18092 36 100.0 30 .................................... AAAATGCTAGGCCCCTTTAATAATTTAAGA 18158 36 100.0 30 .................................... CCGAACCTATCGACCTTCAGGCGGACAAGG 18224 35 91.7 0 .............................-....TT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTACTGGCATTTGAATGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTCTCTAAAAAGAAACTTCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATGTCCAACTCAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTATGATTTTCCGCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGATCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TCACATAAAAAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCATCCCTACACATAACTCATCCCTTTGTAGAAAAGGAAAATGGCAAGTGCGACAAAAAGTACGGTTGCTCCGATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTAACTGGAAAGATGACTGCTAGAAAGGCACCACCTACTGCGCCACCAATATGCCCTGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGCGTCAAGTAGGATTGCCCTAACTGCTGGATATAGGGGCTGCGAGTCGCATAGCGCAAAACGATAATCGCAGCAAATAATCCATAGAGAGAGGTGGATGCTCCTGCTGCTAGGACTTTCGGTGTGAAAGCAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAAAGAAGGAAAAATTGCTTAGAGCCGAAAATCTCCTCCACCTGTCGCCCAAGAAAGTAGAGTGAAATCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //