Array 1 6312-5673 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKU01000034.1 Cronobacter muytjensii ATCC 51329 Cmuy51329_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6311 29 100.0 32 ............................. GTGCGCGCCGTACTGAACGGCAGCAAGACGCA 6250 29 100.0 32 ............................. CCGCTCGACAGCGTGCGGGCCGCCATTGTGCC 6189 29 100.0 32 ............................. GAACTGGCAGGCCGATGGATTGCTGAAGATGG 6128 29 100.0 32 ............................. ACACTGATTATGCGCAGGCCGACGCGTGGCGC 6067 29 100.0 32 ............................. TTTATATTAACGTGGAATTCGCTCCTAAATCG 6006 29 100.0 32 ............................. ATCTGCCTGCAGGTTAATCCAGAAATCCTCGT 5945 29 100.0 32 ............................. CATTTCCCCGTGTACGAACGCGCTTTATTCGT 5884 29 100.0 32 ............................. TGGGGCGGCCGCGTGCGTATTATTTCCACGCA 5823 29 100.0 32 ............................. GCTTTGACATTGTTCTGAACGACGATGAGACC 5762 29 100.0 32 ............................. CCAGACCGATATGCGGCCGAGTACCGGGCCGA 5701 29 86.2 0 .........A.C.......AA........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATTGCTTTTATTGTCGCCAATATCAACATCAACTACCGACGACCCGCAGTGCTGGGCGATCTGCTGACTATCACCAGCGAGGTAAAACAGCTTAACGGCAAAAGCGGCGTGCTGAGTCAGGTGATTACGCTTGCGCCTGAAGGCGAGGTGGTTGCCGATGCGCTCATCACCTTCGTGTGTGTCGATCTGAAAACGCAGAAAGCGCTGCCAATTGAAGGCGAGCTGCGCGAAAAACTGGAAAACATCACAGGCTAAATTCTGCAATCACGCCGCCTGTGCATGCAGTGATGGATTTCTCTCCGTTAAAGGCGAACAATCCGGTAGATGTTATCGGCCCGGAAGCACTGTAAAAAAATGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGATGTAAATGTTGGTAGGTTGTGGCGGGCGATAAAAAGGTAAATAAAACAAAGTATTGTCTTTAGA # Right flank : GAACAGGGCGGTGAATAGAGACCAGAGAATACGCGCCCTCTGGCCCCCCACATTCTTCAGCGGCGTTTATACTTCAAAGCCAACGTAAAATTTCGCAACACTGCGCAACAAAGGAGAGACGATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTTAGCAAAGGGCTGCACGCGCATCTTATTTGCCACTGCCTGCTGATTGAAACCCAAAACGACGGGCTGGTACTGGTGGATACCGGCTTTGGTCGCGACGATATGCGCCATCCCGGCCGTCGGTTGCCGCTGTTTTTTCGGGCGCTGAACAATATTCAGTACCGCGAATCATTAACGGCGTTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACATATCGTGCTGACGCATCTCGATTTCGACCACGCAGGCGGTATCAGCGATTTCCCGCATGCGCAGGTGCATCTGATGCAACAGGAGATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76861-76414 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKU01000039.1 Cronobacter muytjensii ATCC 51329 Cmuy51329_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76860 28 96.4 32 .................T.......... ACTTACGCACTCACGCCCAGCGGCAACGACCA 76800 28 96.4 32 .................T.......... TCACCCGCCAGCCGCTTATCTACCCACAGCAC 76740 28 100.0 32 ............................ AGTAAGGTTACCCTGCTGGATAAGTATTGATC 76680 28 100.0 32 ............................ GTCAGGAATCCCGGTTTTAGGCTCAACAGCAT 76620 28 100.0 32 ............................ GTGAGAGTCCGCCGCTTCTACAATCAAATCTG 76560 28 100.0 32 ............................ AGCCCGGATACCGTGATTTCGCCGGTTGCGGC 76500 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 76440 27 78.6 0 ...T.......TA........C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCAGGGTTACAGGATTACTGCCAGAGCAGCGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGTAAAGGCTGGCTGACGGAAGAAGCGGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTGTTGATTTTTATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATCAAAATGCATACCAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATACTGCTCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATCAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCGGCGCTATTGACGCCCGACGCCCGCAGCAGCATTCAGCTTACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACCACCTGGGGCTATAACGGCTCGCTGCTCGGGCCGGCTATCAAGCTGCGCCAGGGGAAGCCGGTGAATGTCGATATCCGCAATACCCTCGCCGAAGAGACCACGGTGCACTGGCATGGCCTGGAAGTGCCGGGCGCAGTGGATGGCGGCCCCCAGGGCGTTATCGCGCCGGGGCAGACCCGCAGCGTAAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88065-85332 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKU01000039.1 Cronobacter muytjensii ATCC 51329 Cmuy51329_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88064 28 100.0 33 ............................ ATGTAGGTAAAGCGCAAGTAATCAATGCTCGTG 88003 28 100.0 32 ............................ CCGCGGCGCGGGCGAGTCAGCGAGCGGCAAAC 87943 28 100.0 32 ............................ TTTCCCGAACTCGCGAGTCGTGGGCACCAGAC 87883 28 100.0 33 ............................ TCTGGTGATATGGCTCGCGCTTACTACTCACAT 87822 28 100.0 32 ............................ ATAGATTCCTCTGCGGCGCGACAGGCTGTTAG 87762 28 100.0 32 ............................ CTCAGCAGTACTGGCGCAGCACTGGCCGCACG 87702 28 100.0 32 ............................ ATGGCGCTGGATGGCCTGAAGGACGATGATTT 87642 28 100.0 32 ............................ AACCGCTTCAAAAATCATGCTGACGACGCTTA 87582 28 100.0 33 ............................ CACACGCCGCGTTTAATATCGTCAATGTCCTGT 87521 28 100.0 32 ............................ TCATAACGCTTTACAATGAGGCCAAGCATCGG 87461 28 100.0 33 ............................ TTTCGGCAATCCGCAAGCCGCGCGACGAAGTAA 87400 28 100.0 32 ............................ GCACACCGCGACACACAGACGCCAGGCAATAC 87340 28 100.0 32 ............................ GATATCCGCAATCGCCTGGTCAATCTCGTATT 87280 28 100.0 32 ............................ GCAGGGAACACCGCGGCGGCATCCGTCACGCC 87220 28 100.0 32 ............................ AGCTCGCTCGCTCTGACGAGTGGCGGTGGGCA 87160 28 100.0 32 ............................ ACACATCCTAAATCGACACATAAAATGATAAT 87100 28 100.0 32 ............................ CAAATGTCATGTTGACTGTATTGTCATCAGAT 87040 28 100.0 32 ............................ ATGAAAGATATAGCGATTAGAACGGTGCTTGA 86980 28 100.0 32 ............................ TCAACGCCACTTTTGAGCGTTATTCCGTGCCA 86920 28 100.0 32 ............................ AGCAATCAAGGCTTACAGCGAACTGCAACAGG 86860 28 100.0 32 ............................ TGACTCTGGCTATAGCTGGGAATCGCAGACAC 86800 28 100.0 32 ............................ TCGCCGCTGCGAGATTAATGAACTAATGGACG 86740 28 100.0 32 ............................ TCCGGCGGCGTCTACTATCTGAACTGGGGTGA 86680 28 100.0 32 ............................ TACCTCACTGGCGCGCCGCTAACTCTAAAGAT 86620 28 100.0 32 ............................ CGGCTGACGGCGTTAAGCGCCCGCCACAACGC 86560 28 100.0 32 ............................ CATTCTCTTCAGCCAGATGCAGGCCATAGGCA 86500 28 100.0 32 ............................ TCTGTGGATAACTTTTCATCCGGTAACGCAGT 86440 28 100.0 32 ............................ CCGGCGGCCAGCTCTGGGCGATTGCCGTTCCC 86380 28 100.0 32 ............................ TGTCGCTGTTACAGCGCCGGATATGACGGCAT 86320 28 100.0 32 ............................ AAACGGCAGAACCGCCACATAGAAACGGCAGA 86260 28 100.0 32 ............................ TATCTTCACTCGATGCAGATCGGGGAGCAATT 86200 28 100.0 32 ............................ ATGTCCGCGGTCGCTCGCGCCTTCAACTTCAA 86140 28 100.0 33 ............................ CAGCACCGCCAGCAGTGGGCAAAAAATCGCATC 86079 28 100.0 32 ............................ CGACACCGGGCGCACTGACGTGCCGGGTATCG 86019 28 100.0 32 ............................ GCAGGGCGGTGTGCGTTTATGACGACGGGCGC 85959 28 100.0 32 ............................ ACCCGACCCCCACCAGCGGAATACCTGCTGAC 85899 28 100.0 32 ............................ GCCCGCAGGCACCGAGCCAGCTAAAGGCTGAA 85839 28 100.0 32 ............................ GCCAGCGCGTCGCGCTCGCCCTCGACTTTCGC 85779 28 100.0 32 ............................ CACTCCTCATATTCCGACTCAGGCCAGCCGAG 85719 28 100.0 33 ............................ AAACGCCACGGCATTAAGCCGAACCCGCTCTAT 85658 28 100.0 32 ............................ TCCAATTAATTGTGGCCGTAGCTCGCGCGCCC 85598 28 100.0 32 ............................ CGACAGACGAGGAAGACGACGAGGTGCTGCAC 85538 28 100.0 32 ............................ TCGGGCGCTACGGCATCCCCCCAGACCGCGTA 85478 28 100.0 32 ............................ AGTCAGGCTCGTTGCCCTCCGGGATAACTGCT 85418 28 100.0 32 ............................ GCACCGTACCTCGCAGCACCGCCCGCGCCGTT 85358 27 89.3 0 .......A............-...A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCAAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAACGAAAAACCCGCAGGTTGATATGCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACCACCGCTGTGAAATCTGCCGCTTAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACGTTCACGTTAAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : ATGCCATTTTTAATGCCATCATCGACGGCAAAAGCCCATACCTAAAGATTAATAAATAAAATTCTTTATTTATTCGTGCCCTTTGACGTGGCGGAGTGCATGACGACCGTGTATTTGGGCTGATATATTTTAAAAATTAAAAGGATGTCACGATATGGTGCCTTAATTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATACTTCCTCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTTCTGGTTAATGGCGGCCGGGTGGAATATGTCACCGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTCACACAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //