Array 1 65798-67351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOQ010000010.1 Escherichia coli strain PE01_383 .PE01_383.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65798 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 65859 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 65920 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 65981 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 66042 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 66103 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 66164 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 66225 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 66286 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 66347 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 66408 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 66469 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 66530 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 66591 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 66652 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 66713 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 66774 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 66835 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66896 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66957 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 67018 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 67079 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 67140 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 67201 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 67262 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 67323 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93052-93569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOQ010000010.1 Escherichia coli strain PE01_383 .PE01_383.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93052 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 93113 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 93175 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 93236 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 93297 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 93358 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 93419 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 93480 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 93541 28 75.9 0 .A.........C..T....A..-.C...C | T [93560] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //